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Gene Card

Search by standard ID, NCBI Gene ID, GeneID, locus tag, transcript ID, protein ID, or a manually reviewed literature gene name. The page resolves the query to a Red Sage gene and integrates coordinates, sequences, annotations, subcellular localization, EMS variants, and downloads.
Examples

Resolved gene

SmilChr04G002838

Chromosome: Chr04 Coordinates: 44522567-44527405 Strand: + Biotype: protein_coding

Basic Information

Standard Gene IDSmilChr04G002838
NameSmilChr04G002838
DescriptionGTP-binding protein At2g22870
Chromosome / SeqIDChr04 / NC_080390.1
Coordinates and Strand44522567 - 44527405 / +

ID Mapping

NCBI Gene IDLOC131021925
GeneID131021925
locus_tag-
NCBI NameLOC131021925
Original querySmilChr04G002838

Open ID mapping

Functional Annotation

SourceGFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
DescriptionGTP-binding protein At2g22870
ProductGTP-binding protein At2g22870
ArabidopsisAT2G22870 (EMB2001)
P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:816818]
identity=68.6; qcov=0.964; evalue=6.61e-153; confidence=high
RiceOs03g0232500
-
identity=76.4; qcov=0.78; evalue=2.04e-138; confidence=high
GOGO:0005525 (GTP binding)
KEGG-
PfamPF01926 (MMR_HSR1)
InterPro-
eggNOG-
NRGeneID:131021925

Open annotation module

Subcellular Localization Top 5

RankLocationChineseScoreProtein ID
1 Mitochondrion 线粒体 1.00000 XP_057807248.1
2 Mitochondrion matrix 线粒体基质 0.40000 XP_057807248.1
3 Chloroplast 叶绿体 0.20000 XP_057807248.1
4 Nucleus 细胞核 0.00000 XP_057807248.1
5 Chromosome 染色体 0.00000 XP_057807248.1

Open subcellular search

EMS Mutant Variants

The table shows the first 12 candidate EMS variants for this gene. Open the EMS module for full filtering and downloads.

Position REF ALT Type Effect Carriers Samples
Chr4:44525072 G A EMS_canonical_SNV CDS_variant 3 B27,C11,C69
Chr4:44525127 C T EMS_canonical_SNV CDS_variant 2 B128,C86
Chr4:44525166 C T EMS_canonical_SNV CDS_variant 4 B107,B130,B63,C53
Chr4:44525211 G A EMS_canonical_SNV CDS_variant 1 B80
Chr4:44525220 G A EMS_canonical_SNV CDS_variant 1 C81
Chr4:44525352 C T EMS_canonical_SNV CDS_variant 1 C23
Chr4:44525360 G A EMS_canonical_SNV CDS_variant 1 D6
Chr4:44525631 C T EMS_canonical_SNV CDS_variant 1 A18
Chr4:44526824 G A EMS_canonical_SNV CDS_variant 4 A18,A21,B46,C85

Open EMS variants

Predicted Protein Domains

Domain results are from the Pfam-A HMM database and HMMER hmmscan; positions are amino-acid coordinates on the corresponding protein sequence.

XP_057807248.1
304 aa
N
1
152
304
MMR_HSR1
C
PF01926 MMR_HSR1 126-243 aa
XP_057807249.1
304 aa
N
1
152
304
MMR_HSR1
C
PF01926 MMR_HSR1 126-243 aa
Protein ID Source Domain ID Domain name Type Start aa End aa E-value Score Description
XP_057807248.1 Pfam PF01926 MMR_HSR1 Family 126 243 2e-18 67.3 50S ribosome-binding GTPase
XP_057807249.1 Pfam PF01926 MMR_HSR1 Family 126 243 2e-18 67.3 50S ribosome-binding GTPase

cDNA / CDS / Protein Sequences

Download genomic DNA (gene region only)

Every public gene has transcript sequence from the reference annotation. Protein-coding genes also have CDS and protein sequences. CDS and protein downloads do not apply to noncoding RNA. Version suffixes of original accessions are retained.

cDNA

2 records

Download cDNA FASTA
XM_057951266.1
AAAGAAATTAATATTAAAAAAATTGAAAGAAATTTAAGAGCTCTTGCACAGTTGTTGCACTGCTCATTCTTCTCTCTGCGACACAGCTGCTCTCTATCTCTCTCACACACTCTCTCTCGTCTCCGGCCTCTCGGTGCCCCCGCCCTCGCCGGTTTGCCCAATCCCTCGTCTCCCAGTCTCCCTCATCCCCTCTCTTCTTTCTGCGCCACCGGTCTCGCAGACCCGCCCAGCCTCCTCCATCATTGGCGCCTGCGTCAGAA...
XM_057951265.1
ATATATATATATATAGATTCTATTGCAAATGGTATGCATTATTTGTTGTCCGTAAATGTGTTTTTTGAAGACATTATATTAGTGTATTGCATGAGTTGTCTGTCATTATACATATTTACAATTAACAATAAGGATGCGTTACTCTTTGATGGATAAATTTATTATGAAAAATGAGGGATAACAAAAGTTTATACCTTTAAATGCCTTTTTCTTTATTCATAGAGGGATAATATTATCCGTCCTTAAAGTGAAAATAAGAA...

CDS

2 records

Download CDS FASTA
LOC131021925
ATGCTGGTGCAGCTACTTCATCGGCTGCTCAGTCCCAATTTCTCATCACTCCGCAACTTCCCATCTCCAAACCCTCACAAGACTCCACCATTTTCTGTTTCACTCCGCGCCTCCATTTCCCAGAAGGCTAACCCCCAATCCTCCTCCGCCCCCAGTCTCCCAAAACCGGAGGCGGCCTCTGAAGCCTCTCGGTTCGCGCGGACCGTGCTATTTGTGCCGCCTGGAGTCCAGCCGGATGAAATCACGGAAGAAAAGGTCCT...
LOC131021925
ATGCTGGTGCAGCTACTTCATCGGCTGCTCAGTCCCAATTTCTCATCACTCCGCAACTTCCCATCTCCAAACCCTCACAAGACTCCACCATTTTCTGTTTCACTCCGCGCCTCCATTTCCCAGAAGGCTAACCCCCAATCCTCCTCCGCCCCCAGTCTCCCAAAACCGGAGGCGGCCTCTGAAGCCTCTCGGTTCGCGCGGACCGTGCTATTTGTGCCGCCTGGAGTCCAGCCGGATGAAATCACGGAAGAAAAGGTCCT...

Protein

2 records

Download Protein FASTA
XP_057807248.1
MLVQLLHRLLSPNFSSLRNFPSPNPHKTPPFSVSLRASISQKANPQSSSAPSLPKPEAASEASRFARTVLFVPPGVQPDEITEEKVLPGSNIVLGPYAGDAKIKEVNFVKSSSRPKECPRDDRPEFAMLGRSNVGKSSLINSLVRKKEVALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFANAPESARMDWSSFTKGYFLNRDTLVSVLLLVDASVPPQKIDLDCANWLGRNNIPMTFVFTKCDKTKGGKAKRPDENIR...
XP_057807249.1
MLVQLLHRLLSPNFSSLRNFPSPNPHKTPPFSVSLRASISQKANPQSSSAPSLPKPEAASEASRFARTVLFVPPGVQPDEITEEKVLPGSNIVLGPYAGDAKIKEVNFVKSSSRPKECPRDDRPEFAMLGRSNVGKSSLINSLVRKKEVALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFANAPESARMDWSSFTKGYFLNRDTLVSVLLLVDASVPPQKIDLDCANWLGRNNIPMTFVFTKCDKTKGGKAKRPDENIR...

Flanking Sequence Downloads

Upstream/downstream length is capped at 10000 bp. Negative-strand genes are reverse-complemented so the exported FASTA follows transcriptional 5′ to 3′ orientation.

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