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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr04G002839

染色体: Chr04 坐标: 44527303-44529890 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr04G002839
名称SmilChr04G002839
描述putative pentatricopeptide repeat-containing protein At1g09680
染色体 / SeqIDChr04 / NC_080390.1
坐标与链方向44527303 - 44529890 / -

ID 对照

NCBI Gene IDLOC131021911
GeneID131021911
locus_tag-
NCBI NameLOC131021911
原始查询SmilChr04G002839

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述putative pentatricopeptide repeat-containing protein At1g09680
产物putative pentatricopeptide repeat-containing protein At1g09680
ArabidopsisAT1G09680 (AT1G09680)
Pentatricopeptide repeat (PPR) superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:837496]
identity=45.9; qcov=1.02; evalue=6.77e-179; confidence=high
RiceOs06g0152500
-
identity=35.1; qcov=0.701; evalue=3.98e-65; confidence=medium
GOGO:0005515 (protein binding)
KEGG-
PfamPF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF17177 (PPR_long); PF23276 (TPR_24)
InterPro-
eggNOG-
NRGeneID:131021911

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Mitochondrion 线粒体 1.00000 XP_057807232.1
2 Nucleus 细胞核 0.00000 XP_057807232.1
3 Chromosome 染色体 0.00000 XP_057807232.1
4 Centromere 着丝粒 0.00000 XP_057807232.1
5 Chromatin 染色质 0.00000 XP_057807232.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr4:44528088 G A EMS_canonical_SNV CDS_variant 3 B27,C11,C69
Chr4:44528094 C T EMS_canonical_SNV CDS_variant 3 A21,B122,B20
Chr4:44528154 G GCA 2bp_insertion frameshift_variant 16 A15,B133,B137,B16,B24,B32,B50,B71,B99,C25,C32,C34,C43,C48,C61,C68
Chr4:44528541 C T EMS_canonical_SNV CDS_variant 1 D1
Chr4:44528624 G A EMS_canonical_SNV CDS_variant 1 D1
Chr4:44528691 C T EMS_canonical_SNV CDS_variant 1 D11
Chr4:44528735 G A EMS_canonical_SNV CDS_variant 4 B107,B130,B63,C53
Chr4:44528784 C T EMS_canonical_SNV CDS_variant 4 B74,C28,C36,C80
Chr4:44529533 C T EMS_canonical_SNV CDS_variant 1 B59
Chr4:44529647 G A EMS_canonical_SNV CDS_variant 4 B129,B130,C26,C55
Chr4:44529695 G A EMS_canonical_SNV CDS_variant 2 B68,C9

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057807232.1
583 aa
N
1
292
583
PPR
PPR_3
PPR
TPR_24
PPR_2
PPR
PPR_3
PPR_1
PPR
PPR_2
TPR_24
PPR_1
PPR_3
PPR_2
PPR
PPR_long
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR
PPR_2
TPR_24
PPR_1
PPR_2
PPR
PPR_1
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR
C
PF01535 PPR 95-117 aa PF13812 PPR_3 209-262 aa PF01535 PPR 219-246 aa PF23276 TPR_24 228-347 aa PF13041 PPR_2 249-298 aa PF01535 PPR 252-282 aa PF13812 PPR_3 277-329 aa PF12854 PPR_1 280-312 aa PF01535 PPR 287-316 aa PF13041 PPR_2 292-333 aa PF23276 TPR_24 313-413 aa PF12854 PPR_1 316-347 aa PF13812 PPR_3 316-367 aa PF13041 PPR_2 319-367 aa PF01535 PPR 322-352 aa PF17177 PPR_long 336-441 aa PF12854 PPR_1 351-383 aa PF13041 PPR_2 354-403 aa PF01535 PPR 357-387 aa PF13812 PPR_3 378-434 aa PF12854 PPR_1 385-417 aa PF01535 PPR 392-421 aa PF13041 PPR_2 392-438 aa PF23276 TPR_24 417-515 aa PF12854 PPR_1 424-452 aa PF13041 PPR_2 425-473 aa PF01535 PPR 427-454 aa PF12854 PPR_1 457-488 aa PF01535 PPR 463-492 aa PF13812 PPR_3 483-541 aa PF12854 PPR_1 491-522 aa PF13041 PPR_2 495-543 aa PF01535 PPR 497-527 aa PF12854 PPR_1 526-543 aa PF01535 PPR 532-553 aa
XP_057807233.1
556 aa
N
1
278
556
PPR
PPR
PPR_3
PPR_1
PPR_2
PPR
TPR_24
PPR_1
PPR_2
PPR_3
PPR
PPR_long
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR
PPR_2
TPR_24
PPR_1
PPR_2
PPR
PPR_1
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR
C
PF01535 PPR 95-117 aa PF01535 PPR 219-246 aa PF13812 PPR_3 251-302 aa PF12854 PPR_1 253-285 aa PF13041 PPR_2 257-306 aa PF01535 PPR 260-289 aa PF23276 TPR_24 282-386 aa PF12854 PPR_1 289-320 aa PF13041 PPR_2 292-341 aa PF13812 PPR_3 293-340 aa PF01535 PPR 295-325 aa PF17177 PPR_long 310-414 aa PF12854 PPR_1 324-356 aa PF13041 PPR_2 327-376 aa PF01535 PPR 330-360 aa PF13812 PPR_3 351-407 aa PF12854 PPR_1 358-390 aa PF01535 PPR 365-394 aa PF13041 PPR_2 365-411 aa PF23276 TPR_24 390-488 aa PF12854 PPR_1 397-425 aa PF13041 PPR_2 398-446 aa PF01535 PPR 400-427 aa PF12854 PPR_1 430-461 aa PF01535 PPR 436-465 aa PF13812 PPR_3 456-514 aa PF12854 PPR_1 464-495 aa PF13041 PPR_2 468-516 aa PF01535 PPR 470-500 aa PF12854 PPR_1 499-516 aa PF01535 PPR 505-526 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057807232.1 Pfam PF01535 PPR Repeat 95 117 1e-78 255.0 PPR repeat
XP_057807232.1 Pfam PF13812 PPR_3 Repeat 209 262 1.2e-50 170.1 Pentatricopeptide repeat domain
XP_057807232.1 Pfam PF01535 PPR Repeat 219 246 1e-78 255.0 PPR repeat
XP_057807232.1 Pfam PF23276 TPR_24 Repeat 228 347 1.1e-29 103.7 Pentatricopeptide repeat-containing protein
XP_057807232.1 Pfam PF13041 PPR_2 Repeat 249 298 9.3e-112 365.7 PPR repeat family
XP_057807232.1 Pfam PF01535 PPR Repeat 252 282 1e-78 255.0 PPR repeat
XP_057807232.1 Pfam PF13812 PPR_3 Repeat 277 329 1.2e-50 170.1 Pentatricopeptide repeat domain
XP_057807232.1 Pfam PF12854 PPR_1 Repeat 280 312 3.5e-105 344.1 PPR repeat
XP_057807232.1 Pfam PF01535 PPR Repeat 287 316 1e-78 255.0 PPR repeat
XP_057807232.1 Pfam PF13041 PPR_2 Repeat 292 333 9.3e-112 365.7 PPR repeat family
XP_057807232.1 Pfam PF23276 TPR_24 Repeat 313 413 1.1e-29 103.7 Pentatricopeptide repeat-containing protein
XP_057807232.1 Pfam PF12854 PPR_1 Repeat 316 347 3.5e-105 344.1 PPR repeat
XP_057807232.1 Pfam PF13812 PPR_3 Repeat 316 367 1.2e-50 170.1 Pentatricopeptide repeat domain
XP_057807232.1 Pfam PF13041 PPR_2 Repeat 319 367 9.3e-112 365.7 PPR repeat family
XP_057807232.1 Pfam PF01535 PPR Repeat 322 352 1e-78 255.0 PPR repeat
XP_057807232.1 Pfam PF17177 PPR_long Repeat 336 441 1.5e-21 77.4 Pentacotripeptide-repeat region of PRORP
XP_057807232.1 Pfam PF12854 PPR_1 Repeat 351 383 3.5e-105 344.1 PPR repeat
XP_057807232.1 Pfam PF13041 PPR_2 Repeat 354 403 9.3e-112 365.7 PPR repeat family
XP_057807232.1 Pfam PF01535 PPR Repeat 357 387 1e-78 255.0 PPR repeat
XP_057807232.1 Pfam PF13812 PPR_3 Repeat 378 434 1.2e-50 170.1 Pentatricopeptide repeat domain
XP_057807232.1 Pfam PF12854 PPR_1 Repeat 385 417 3.5e-105 344.1 PPR repeat
XP_057807232.1 Pfam PF01535 PPR Repeat 392 421 1e-78 255.0 PPR repeat
XP_057807232.1 Pfam PF13041 PPR_2 Repeat 392 438 9.3e-112 365.7 PPR repeat family
XP_057807232.1 Pfam PF23276 TPR_24 Repeat 417 515 1.1e-29 103.7 Pentatricopeptide repeat-containing protein
XP_057807232.1 Pfam PF12854 PPR_1 Repeat 424 452 3.5e-105 344.1 PPR repeat
XP_057807232.1 Pfam PF13041 PPR_2 Repeat 425 473 9.3e-112 365.7 PPR repeat family
XP_057807232.1 Pfam PF01535 PPR Repeat 427 454 1e-78 255.0 PPR repeat
XP_057807232.1 Pfam PF12854 PPR_1 Repeat 457 488 3.5e-105 344.1 PPR repeat
XP_057807232.1 Pfam PF01535 PPR Repeat 463 492 1e-78 255.0 PPR repeat
XP_057807232.1 Pfam PF13812 PPR_3 Repeat 483 541 1.2e-50 170.1 Pentatricopeptide repeat domain
XP_057807232.1 Pfam PF12854 PPR_1 Repeat 491 522 3.5e-105 344.1 PPR repeat
XP_057807232.1 Pfam PF13041 PPR_2 Repeat 495 543 9.3e-112 365.7 PPR repeat family
XP_057807232.1 Pfam PF01535 PPR Repeat 497 527 1e-78 255.0 PPR repeat
XP_057807232.1 Pfam PF12854 PPR_1 Repeat 526 543 3.5e-105 344.1 PPR repeat
XP_057807232.1 Pfam PF01535 PPR Repeat 532 553 1e-78 255.0 PPR repeat
XP_057807233.1 Pfam PF01535 PPR Repeat 95 117 2.7e-73 237.9 PPR repeat
XP_057807233.1 Pfam PF01535 PPR Repeat 219 246 2.7e-73 237.9 PPR repeat
XP_057807233.1 Pfam PF13812 PPR_3 Repeat 251 302 6.4e-46 155.0 Pentatricopeptide repeat domain
XP_057807233.1 Pfam PF12854 PPR_1 Repeat 253 285 9e-99 323.6 PPR repeat
XP_057807233.1 Pfam PF13041 PPR_2 Repeat 257 306 2.3e-104 342.1 PPR repeat family
XP_057807233.1 Pfam PF01535 PPR Repeat 260 289 2.7e-73 237.9 PPR repeat
XP_057807233.1 Pfam PF23276 TPR_24 Repeat 282 386 5.9e-23 82.0 Pentatricopeptide repeat-containing protein
XP_057807233.1 Pfam PF12854 PPR_1 Repeat 289 320 9e-99 323.6 PPR repeat
XP_057807233.1 Pfam PF13041 PPR_2 Repeat 292 341 2.3e-104 342.1 PPR repeat family
XP_057807233.1 Pfam PF13812 PPR_3 Repeat 293 340 6.4e-46 155.0 Pentatricopeptide repeat domain
XP_057807233.1 Pfam PF01535 PPR Repeat 295 325 2.7e-73 237.9 PPR repeat
XP_057807233.1 Pfam PF17177 PPR_long Repeat 310 414 4.4e-20 72.7 Pentacotripeptide-repeat region of PRORP
XP_057807233.1 Pfam PF12854 PPR_1 Repeat 324 356 9e-99 323.6 PPR repeat
XP_057807233.1 Pfam PF13041 PPR_2 Repeat 327 376 2.3e-104 342.1 PPR repeat family
XP_057807233.1 Pfam PF01535 PPR Repeat 330 360 2.7e-73 237.9 PPR repeat
XP_057807233.1 Pfam PF13812 PPR_3 Repeat 351 407 6.4e-46 155.0 Pentatricopeptide repeat domain
XP_057807233.1 Pfam PF12854 PPR_1 Repeat 358 390 9e-99 323.6 PPR repeat
XP_057807233.1 Pfam PF01535 PPR Repeat 365 394 2.7e-73 237.9 PPR repeat
XP_057807233.1 Pfam PF13041 PPR_2 Repeat 365 411 2.3e-104 342.1 PPR repeat family
XP_057807233.1 Pfam PF23276 TPR_24 Repeat 390 488 5.9e-23 82.0 Pentatricopeptide repeat-containing protein
XP_057807233.1 Pfam PF12854 PPR_1 Repeat 397 425 9e-99 323.6 PPR repeat
XP_057807233.1 Pfam PF13041 PPR_2 Repeat 398 446 2.3e-104 342.1 PPR repeat family
XP_057807233.1 Pfam PF01535 PPR Repeat 400 427 2.7e-73 237.9 PPR repeat
XP_057807233.1 Pfam PF12854 PPR_1 Repeat 430 461 9e-99 323.6 PPR repeat
XP_057807233.1 Pfam PF01535 PPR Repeat 436 465 2.7e-73 237.9 PPR repeat
XP_057807233.1 Pfam PF13812 PPR_3 Repeat 456 514 6.4e-46 155.0 Pentatricopeptide repeat domain
XP_057807233.1 Pfam PF12854 PPR_1 Repeat 464 495 9e-99 323.6 PPR repeat
XP_057807233.1 Pfam PF13041 PPR_2 Repeat 468 516 2.3e-104 342.1 PPR repeat family
XP_057807233.1 Pfam PF01535 PPR Repeat 470 500 2.7e-73 237.9 PPR repeat
XP_057807233.1 Pfam PF12854 PPR_1 Repeat 499 516 9e-99 323.6 PPR repeat
XP_057807233.1 Pfam PF01535 PPR Repeat 505 526 2.7e-73 237.9 PPR repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XM_057951249.1
AATGACGGCCCAAATAATCGACAGTGTATAGTCTAGGGAAAAAAATGATTCGAACATGGCGACCAAGAACGTTTCAAGAATTCAGCAGCGCCACTCCCCCACCGCCTGGTCCATCCAGGAGCCAGACCCCATACTCACGGCCCTCTCCCAAGCCATCCAAAATGCTCCGGCGAAACCCCTCCACGCCTCCCTCAAGCATCTCCTCCCCTCTCTCAAGCCCCACCACTTGGTCAATCTCATCAACCTCAATCCACACTCTC...
XM_057951250.1
AATTGGTGATAAAGCCCAAATGACGGCCCAAATAATCGACAGTGTATAGTCTAGGGAAAAAAATGATTCGAACATGGCGACCAAGAACGTTTCAAGAATTCAGCAGCGCCACTCCCCCACCGCCTGGTCCATCCAGGAGCCAGACCCCATACTCACGGCCCTCTCCCAAGCCATCCAAAATGCTCCGGCGAAACCCCTCCACGCCTCCCTCAAGCATCTCCTCCCCTCTCTCAAGCCCCACCACTTGGTCAATCTCATCA...

CDS

2 records

下载 CDS FASTA
LOC131021911
ATGGCGACCAAGAACGTTTCAAGAATTCAGCAGCGCCACTCCCCCACCGCCTGGTCCATCCAGGAGCCAGACCCCATACTCACGGCCCTCTCCCAAGCCATCCAAAATGCTCCGGCGAAACCCCTCCACGCCTCCCTCAAGCATCTCCTCCCCTCTCTCAAGCCCCACCACTTGGTCAATCTCATCAACCTCAATCCACACTCTCTCTCCCCACTCTCTCTCTTCTCCCTCTTCCAATGGTTCTCCACTCCTTCCAACTC...
LOC131021911
ATGGCGACCAAGAACGTTTCAAGAATTCAGCAGCGCCACTCCCCCACCGCCTGGTCCATCCAGGAGCCAGACCCCATACTCACGGCCCTCTCCCAAGCCATCCAAAATGCTCCGGCGAAACCCCTCCACGCCTCCCTCAAGCATCTCCTCCCCTCTCTCAAGCCCCACCACTTGGTCAATCTCATCAACCTCAATCCACACTCTCTCTCCCCACTCTCTCTCTTCTCCCTCTTCCAATGGTTCTCCACTCCTTCCAACTC...

Protein

2 records

下载 Protein FASTA
XP_057807232.1
MATKNVSRIQQRHSPTAWSIQEPDPILTALSQAIQNAPAKPLHASLKHLLPSLKPHHLVNLINLNPHSLSPLSLFSLFQWFSTPSNSTFRHTLHSYCTMIHFLCSHQMFSEAQTLLQIVVSRKGRNSASDVFAAILEFKATQKSHLYVFSGLLTAYLASGLVLDAIQCFRLAKKHKIRVPFDACRRVVEHLMKLKSYKLVWGFYEEILECGYRPSLYFFNILMDKFCKTGEVKLAQLVFDSIGRWGLRPSVVSFNTLMNG...
XP_057807233.1
MATKNVSRIQQRHSPTAWSIQEPDPILTALSQAIQNAPAKPLHASLKHLLPSLKPHHLVNLINLNPHSLSPLSLFSLFQWFSTPSNSTFRHTLHSYCTMIHFLCSHQMFSEAQTLLQIVVSRKGRNSASDVFAAILEFKATQKSHLYVFSGLLTAYLASGLVLDAIQCFRLAKKHKIRVPFDACRRVVEHLMKLKSYKLVWGFYEEILECGYRPSLYFFNILMDKFCKTGEVKLAQLVFDSIGRWGLRPSVENGVCPDVY...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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