当前解析结果
SmilChr04G002847| 统一新 Gene ID | SmilChr04G002847 |
|---|---|
| 名称 | SmilChr04G002847 |
| 描述 | xyloglucan endotransglucosylase/hydrolase protein 9-like |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 44581122 - 44582238 / - |
| NCBI Gene ID | LOC131021929 |
|---|---|
| GeneID | 131021929 |
| locus_tag | - |
| NCBI Name | LOC131021929 |
| 原始查询 | SmilChr04G002847 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | xyloglucan endotransglucosylase/hydrolase protein 9-like |
| 产物 | xyloglucan endotransglucosylase/hydrolase protein 9-like |
| Arabidopsis | AT4G03210 (XTH9)xyloglucan endotransglucosylase/hydrolase 9 [Source:NCBI gene (formerly Entrezgene);Acc:828024] identity=53.2; qcov=1.02; evalue=3.51e-107; confidence=high |
| Rice | Os04g0631200 (OsXTH3)- identity=49.3; qcov=1.07; evalue=1.02e-93; confidence=high |
| GO | GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds); GO:0005618 (cell wall); GO:0010411 (xyloglucan metabolic process); GO:0016762 (xyloglucan:xyloglucosyl transferase activity); GO:0042546 (cell wall biogenesis); GO:0048046 (apoplast) |
| KEGG | - |
| Pfam | PF00722 (Glyco_hydro_16); PF06955 (XET_C) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131021929 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Vacuole | 液泡 | 0.60000 | XP_057807253.1 |
| 2 | Cell wall | 细胞壁 | 0.40000 | XP_057807253.1 |
| 3 | Golgi apparatus | 高尔基体 | 0.20000 | XP_057807253.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057807253.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057807253.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:44581300 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B10,B108,B59 |
Chr4:44581320 |
G |
GT |
1bp_insertion | frameshift_variant | 56 | A1,A10,A13,A16,A25,A3,B10,B110,B114,B125,B126,B127,B133,B134,B137,B18,B26,B27,B29,B3,B30,B38,B39,B42,B43,B5,B51,B53,B58,B69,B75,B80,B83,B85,C1,C12,C13,C15,C22,C3,C30,C50,C51,C57,C59,C70,C71,C73,C74,C76,C8,D4,D5,D6,D7,D8 |
Chr4:44581353 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B122,B20 |
Chr4:44581462 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B107,B130,B63,C53 |
Chr4:44581749 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B74,C28 |
Chr4:44581872 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B84,C57 |
Chr4:44581935 |
CT |
C |
1bp_deletion | frameshift_variant | 1 | B108 |
Chr4:44581935 |
CT |
C |
1bp_deletion | CDS_variant | 1 | B108 |
Chr4:44581941 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B10,B108,B59 |
Chr4:44581966 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B113,B68,C9 |
Chr4:44581973 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B74,C28 |
Chr4:44582017 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A23,B69 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057807253.1PF00722
Glyco_hydro_16 35-212 aa
PF06955
XET_C 229-273 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057807253.1 |
Pfam | PF00722 |
Glyco_hydro_16 | Domain | 35 | 212 | 5e-62 | 209.2 | Glycosyl hydrolases family 16 |
XP_057807253.1 |
Pfam | PF06955 |
XET_C | Family | 229 | 273 | 3.4e-14 | 53.1 | Xyloglucan endo-transglycosylase (XET) C-terminus |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。