Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G002852`

染色体: Chr04 坐标: 44637051-44643486 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G002852`
名称	SmilChr04G002852
描述	uncharacterized SmilChr04G002852
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	44637051 - 44643486 / `+`

ID 对照

NCBI Gene ID	`LOC131021902`
GeneID	`131021902`
locus_tag	`-`
NCBI Name	`LOC131021902`
原始查询	`SmilChr04G002852`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	ARM repeat superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:833741]; symbol=EMB2656; hit=AT5G37630; species=arabidopsis; confidence=high
产物	ARM repeat superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:833741]; symbol=EMB2656; hit=AT5G37630; species=arabidopsis; confidence=high
Arabidopsis	`AT5G37630` (EMB2656) ARM repeat superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:833741] identity=53; qcov=1.01; evalue=0; confidence=high
Rice	`Os06g0256000` - identity=45; qcov=0.391; evalue=1.61e-97; confidence=low
GO	GO:0000793 (condensed chromosome); GO:0000796 (condensin complex); GO:0007076 (mitotic chromosome condensation)
KEGG	-
Pfam	PF12719 (Cnd3)
InterPro	-
eggNOG	-
NR	GeneID:131021902

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057807215.1`
2	Chromosome	染色体	0.20000	`XP_057807215.1`
3	Centromere	着丝粒	0.00000	`XP_057807215.1`
4	Chromatin	染色质	0.00000	`XP_057807215.1`
5	Telomere	端粒	0.00000	`XP_057807215.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:44637937`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr4:44637970`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B41,B75
`Chr4:44639418`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B1
`Chr4:44639444`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B102,B118,B33,B34,B44
`Chr4:44640682`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B38,B39,C13,C51,C57
`Chr4:44640860`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B38,C13,C51,C57
`Chr4:44641104`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C80
`Chr4:44641557`	`CA`	`C`	1bp_deletion	frameshift_variant	1	A18
`Chr4:44641557`	`CA`	`C`	1bp_deletion	CDS_variant	1	A18
`Chr4:44641951`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B1
`Chr4:44641952`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B38,B39,C13,C51,C57
`Chr4:44642632`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C24,C29

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057807215.1

1029 aa

514

1029

Cnd3

PF12719 Cnd3 519-864 aa

XP_057807217.1

1028 aa

514

1028

Cnd3

PF12719 Cnd3 518-863 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057807215.1`	Pfam	`PF12719`	Cnd3	Repeat	519	864	3.2e-52	178.2	Nuclear condensing complex subunits, C-term domain
`XP_057807217.1`	Pfam	`PF12719`	Cnd3	Repeat	518	863	3.2e-52	178.3	Nuclear condensing complex subunits, C-term domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057951232.1
GTTTTCCCGCTTCAAATTCAATTCACAAAACCATTTCAAAAACAGTGTGCGGAAAAAATCTCCAGCAAAAGCAACAATGGCGATCGGTCAATTGGAAGGCTACCGGAAACTTGCCGCAAAAATCGTTACGATTCTCGATGAAGTTCGGTCTTCGAACGCTACTCACAGACGCAATCTCAAGGAACTCCTCGCTCTCCGCTCGCCAGCTCCGGCGGAATTCTGCGCGGCGTTTTGTGAAGCCCTTATACCTCTTTTCAATT...

XM_057951234.1
GTTTTCCCGCTTCAAATTCAATTCACAAAACCATTTCAAAAACAGTGTGCGGAAAAAATCTCCAGCAAAAGCAACAATGGCGATCGGTCAATTGGAAGGCTACCGGAAACTTGCCGCAAAAATCGTTACGATTCTCGATGAAGTTCGGTCTTCGAACGCTACTCACAGACGCAATCTCAAGGAACTCCTCGCTCTCCGCTCGCCAGCTCCGGCGGAATTCTGCGCGGCGTTTTGTGAAGCCCTTATACCTCTTTTCAATT...

CDS

2 records

下载 CDS FASTA

LOC131021902
ATGGCGATCGGTCAATTGGAAGGCTACCGGAAACTTGCCGCAAAAATCGTTACGATTCTCGATGAAGTTCGGTCTTCGAACGCTACTCACAGACGCAATCTCAAGGAACTCCTCGCTCTCCGCTCGCCAGCTCCGGCGGAATTCTGCGCGGCGTTTTGTGAAGCCCTTATACCTCTTTTCAATTTCCAGCGGAAAACCTCCTCCTCTGAGCGTATCATCAAGTTCGTCTCCACTTTCGCTTGCTCGGGCAGCGATAAAGA...

Protein

2 records

下载 Protein FASTA

XP_057807215.1
MAIGQLEGYRKLAAKIVTILDEVRSSNATHRRNLKELLALRSPAPAEFCAAFCEALIPLFNFQRKTSSSERIIKFVSTFACSGSDKDDSGDEFLENFIRFLLVSATAANKTARFRVCQIVSEIIMRLPDDMEVSSELWDEVIECMKIRAGDKVPAVRTFAIRSLARFANDSENSDILELFLEKLPLEQNGDVRKILVLSLPPSSETLSMIIDCTLDVNESVRKAAYCVLASKFPLQSLSIKFRTTILQRGLAERSAAVAK...

XP_057807217.1
MAIGQLEGYRKLAAKIVTILDEVRSSNATHRRNLKELLALRSPAPAEFCAAFCEALIPLFNFQRKTSSSERIIKFVSTFACSGSDKDDSGDEFLENFIRFLLVSATAANKTARFRVCQIVSEIIMRLPDDMEVSSELWDEVIECMKIRAGDKVPAVRTFAIRSLARFANDSENSDILELFLEKLPLEQNGDVRKILVLSLPPSSETLSMIIDCTLDVNESVRKAAYCVLASKFPLQSLSIKFRTTILQRGLAERSAAVAK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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