Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G002893`

染色体: Chr04 坐标: 45152342-45155913 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G002893`
名称	SmilChr04G002893
描述	homeobox-leucine zipper protein HDG11-like
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	45152342 - 45155913 / `+`

ID 对照

NCBI Gene ID	`LOC131021978`
GeneID	`131021978`
locus_tag	`-`
NCBI Name	`LOC131021978`
原始查询	`SmilChr04G002893`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	homeobox-leucine zipper protein HDG11-like
产物	homeobox-leucine zipper protein HDG11-like
Arabidopsis	`AT1G73360` (HDG11) homeodomain GLABROUS 11 [Source:NCBI gene (formerly Entrezgene);Acc:843671] identity=44.5; qcov=0.996; evalue=0; confidence=medium
Rice	`Os06g0208100` (Roc8(t)) - identity=43.7; qcov=1.02; evalue=0; confidence=medium
GO	GO:0000981 (DNA-binding transcription factor activity, RNA polymerase II-specific); GO:0003677 (DNA binding); GO:0006355 (regulation of DNA-templated transcription); GO:0008289 (lipid binding)
KEGG	-
Pfam	PF00046 (Homeodomain); PF01852 (START); PF05920 (Homeobox_KN); PF25797 (PDF2_C)
InterPro	-
eggNOG	-
NR	GeneID:131021978

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057807293.1`
2	Chromosome	染色体	0.00000	`XP_057807293.1`
3	Centromere	着丝粒	0.00000	`XP_057807293.1`
4	Chromatin	染色质	0.00000	`XP_057807293.1`
5	Telomere	端粒	0.00000	`XP_057807293.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:45152400`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B33,B44,C80
`Chr4:45153208`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D6
`Chr4:45153231`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B17,C11,C69
`Chr4:45153247`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B107,B130,B63,C53
`Chr4:45153272`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C39
`Chr4:45153274`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D7
`Chr4:45153294`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B41,B74,C28
`Chr4:45153308`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C71,C8
`Chr4:45153652`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B24
`Chr4:45153662`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B124,B33,B44,C80
`Chr4:45153668`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B24
`Chr4:45153702`	`TG`	`T`	1bp_deletion	frameshift_variant	1	B108

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057807293.1

697 aa

348

697

Homeodomain

Homeobox_KN

START

PDF2_C

PF00046 Homeodomain 22-77 aa PF05920 Homeobox_KN 43-74 aa PF01852 START 220-436 aa PF25797 PDF2_C 457-694 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057807293.1`	Pfam	`PF00046`	Homeodomain	Domain	22	77	1.4e-17	64.0	Homeodomain
`XP_057807293.1`	Pfam	`PF05920`	Homeobox_KN	Family	43	74	3.8e-07	30.6	Homeobox KN domain
`XP_057807293.1`	Pfam	`PF01852`	START	Domain	220	436	9.9e-33	114.0	START domain
`XP_057807293.1`	Pfam	`PF25797`	PDF2_C	Domain	457	694	7e-97	324.0	PDF2-like, C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057951310.1
ATGATTTCATCAAATTGTGGAAATGGATCGGGTGAAGAGGAAGTCTACAATGCTAAAAGGGGAAAGAAGCAATATCATCGACACTCTACCCAACAAATTCAGCAACTTGAAGATTTCTATAAGGAATGTCCACATCCTGATAAGAACCAAAGGCAGCAATTGAGTAGGGAGCTAGGCCTCGACCAGAAGCAGATAAAGTTCTGGTTTCAGAATAAAAGGACTCAGATAAAGGCTCAGAATGAGAAAGCAGACAACAACGC...

CDS

1 records

下载 CDS FASTA

LOC131021978
ATGATTTCATCAAATTGTGGAAATGGATCGGGTGAAGAGGAAGTCTACAATGCTAAAAGGGGAAAGAAGCAATATCATCGACACTCTACCCAACAAATTCAGCAACTTGAAGATTTCTATAAGGAATGTCCACATCCTGATAAGAACCAAAGGCAGCAATTGAGTAGGGAGCTAGGCCTCGACCAGAAGCAGATAAAGTTCTGGTTTCAGAATAAAAGGACTCAGATAAAGGCTCAGAATGAGAAAGCAGACAACAACGC...

Protein

1 records

下载 Protein FASTA

XP_057807293.1
MISSNCGNGSGEEEVYNAKRGKKQYHRHSTQQIQQLEDFYKECPHPDKNQRQQLSRELGLDQKQIKFWFQNKRTQIKAQNEKADNNALRSENEKIHFENLAMQEALKSIICPACNGTCLGDEEKSHILQRLKMENARLKQEYQQTMDFFSNYMGNPAMPLLAMEPLKKKHEKHSLAEGMGVAPLDHEHIPQNSENLISPQDSTGTQEPDKSILIEAACGAMNELIELFRVNEPLWIKSSADGRYMLHRDSYDKLFPKSSH...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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