当前解析结果
SmilChr04G002907| 统一新 Gene ID | SmilChr04G002907 |
|---|---|
| 名称 | SmilChr04G002907 |
| 描述 | sucrose synthase 7-like |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 45326192 - 45330127 / - |
| NCBI Gene ID | LOC131022806 |
|---|---|
| GeneID | 131022806 |
| locus_tag | - |
| NCBI Name | LOC131022806 |
| 原始查询 | SmilChr04G002907 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | sucrose synthase 7-like |
| 产物 | sucrose synthase 7-like |
| Arabidopsis | AT1G73370 (SUS6)sucrose synthase 6 [Source:NCBI gene (formerly Entrezgene);Acc:843672] identity=71.2; qcov=0.974; evalue=0; confidence=high |
| Rice | Os04g0249500 (SUS7)- identity=70.7; qcov=0.971; evalue=0; confidence=high |
| GO | GO:0005985 (sucrose metabolic process); GO:0016157 (sucrose synthase activity) |
| KEGG | smil00500 (Starch and sucrose metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00534 (Glycos_transf_1); PF00862 (GT-B_Sucrose_synth); PF13692 (Glyco_trans_1_4); PF24861 (SUS_N); PF24862 (SUS_EPBD) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131022806 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 1.00000 | XP_057808312.1 |
| 2 | Cytoplasm | 细胞质 | 0.80000 | XP_057808312.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057808312.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057808312.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057808312.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:45326581 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A22 |
Chr4:45326590 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A23,B69 |
Chr4:45326656 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B18 |
Chr4:45326746 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr4:45326780 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B36 |
Chr4:45326785 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B132 |
Chr4:45327020 |
G |
A |
EMS_canonical_SNV | stop_gained | 4 | A7,B35,B55,C23 |
Chr4:45327020 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A7,B35,B55,C23 |
Chr4:45327039 |
G |
GT |
1bp_insertion | frameshift_variant | 1 | C40 |
Chr4:45327039 |
G |
GT |
1bp_insertion | CDS_variant | 1 | C40 |
Chr4:45327080 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A7,B35,B55,C23 |
Chr4:45327086 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B17,C11,C69 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057808312.1PF24861
SUS_N 12-126 aa
PF24862
SUS_EPBD 162-249 aa
PF00862
GT-B_Sucrose_synth 272-560 aa
PF00534
Glycos_transf_1 571-736 aa
PF13692
Glyco_trans_1_4 579-733 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057808312.1 |
Pfam | PF24861 |
SUS_N | Domain | 12 | 126 | 1.1e-48 | 164.9 | Sucrose synthase N-terminal |
XP_057808312.1 |
Pfam | PF24862 |
SUS_EPBD | Domain | 162 | 249 | 3.1e-29 | 102.0 | Sucrose synthase EPBD domain |
XP_057808312.1 |
Pfam | PF00862 |
GT-B_Sucrose_synth | Domain | 272 | 560 | 3.3e-165 | 548.8 | Sucrose synthase first GT-B domain |
XP_057808312.1 |
Pfam | PF00534 |
Glycos_transf_1 | Domain | 571 | 736 | 5.4e-31 | 108.2 | Glycosyl transferases group 1 |
XP_057808312.1 |
Pfam | PF13692 |
Glyco_trans_1_4 | Domain | 579 | 733 | 2.6e-13 | 51.2 | Glycosyl transferases group 1 |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。