Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr04G002930

染色体: Chr04 坐标: 45572433-45574424 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr04G002930
名称SmilChr04G002930
描述uncharacterized protein At1g65710-like
染色体 / SeqIDChr04 / NC_080390.1
坐标与链方向45572433 - 45574424 / +

ID 对照

NCBI Gene IDLOC131020095
GeneID131020095
locus_tag-
NCBI NameLOC131020095
原始查询SmilChr04G002930

查看完整 ID 对照表

功能注释

来源GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述serine/arginine repetitive matrix-like protein [Source:NCBI gene (formerly Entrezgene);Acc:842882]; symbol=AT1G65710; hit=AT1G65710; species=arabidopsis; confidence=medium
产物serine/arginine repetitive matrix-like protein [Source:NCBI gene (formerly Entrezgene);Acc:842882]; symbol=AT1G65710; hit=AT1G65710; species=arabidopsis; confidence=medium
ArabidopsisAT1G65710 (AT1G65710)
serine/arginine repetitive matrix-like protein [Source:NCBI gene (formerly Entrezgene);Acc:842882]
identity=44.4; qcov=0.962; evalue=1.47e-72; confidence=medium
RiceOs04g0528600 (OSJNBa0074L08.7)
-
identity=37.5; qcov=1.11; evalue=6.4e-65; confidence=medium
GO-
KEGG-
PfamPF30950 (At1g65710)
InterPro-
eggNOG-
NRGeneID:131020095

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cytoskeleton 细胞骨架 1.00000 XP_057804738.1
2 Cell membrane 细胞膜 0.80000 XP_057804738.1
3 Nucleus 细胞核 0.60000 XP_057804738.1
4 Cytosol 细胞质基质 0.20000 XP_057804738.1
5 Chromosome 染色体 0.00000 XP_057804738.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr4:45572873 G A EMS_canonical_SNV CDS_variant 3 B57,B88,C49
Chr4:45572985 C T EMS_canonical_SNV CDS_variant 1 B40
Chr4:45573039 AC A 1bp_deletion frameshift_variant 1 C17
Chr4:45573039 AC A 1bp_deletion CDS_variant 1 C17
Chr4:45573094 G A EMS_canonical_SNV CDS_variant 2 B126,C80
Chr4:45573131 G A EMS_canonical_SNV CDS_variant 1 B82
Chr4:45573279 C T EMS_canonical_SNV CDS_variant 5 B111,B31,B41,B8,C51
Chr4:45573427 C T EMS_canonical_SNV CDS_variant 4 A11,B103,C4,C41
Chr4:45573445 G A EMS_canonical_SNV CDS_variant 3 A18,B126,C80
Chr4:45573456 C T EMS_canonical_SNV CDS_variant 3 B38,B39,C13
Chr4:45573487 C T EMS_canonical_SNV CDS_variant 1 B104
Chr4:45573699 G GCA 2bp_insertion frameshift_variant 135 A11,A13,A14,A15,A19,A2,A22,A4,A6,A7,A8,B10,B102,B104,B105,B107,B109,B11,B110,B112,B115,B118,B121,B122,B123,B125,B129,B130,B131,B132,B133,B136,B137,B138,B14,B16,B17,B18,B19,B2,B22,B24,B25,B32,B35,B37,B38,B39,B4,B40,B45,B47,B49,B5,B50,B51,B54,B55,B59,B6,B61,B62,B63,B65,B7,B71,B72,B73,B76,B81,B82,B83,B84,B86,B89,B9,B90,B91,B92,B94,B95,B99,C11,C14,C15,C18,C20,C21,C22,C23,C24,C25,C27,C29,C32,C34,C39,C4,C40,C43,C45,C46,C47,C48,C50,C52,C53,C58,C59,C60,C61,C62,C67,C68,C69,C7,C71,C72,C75,C76,C78,C79,C8,C81,C82,C83,C84,C86,C87,D1,D11,D2,D3,D5,D9

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057804738.1
520 aa
N
1
260
520
At1g65710
C
PF30950 At1g65710 1-460 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057804738.1 Pfam PF30950 At1g65710 Domain 1 460 1.4e-164 549.2 At1g65710-like

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057948755.1
CTCTTTCTTCAGCCTACAAAAAAGTTGCATCTTTATTAGTAATTTGAGTTGTTTTCTTGAACACTGTACCCTTTTCTTATCCCCACTACAAATCTTGATTTTTTTTCAAACTTTTCTTCTCCAAATTGTTTTTCAATTTTTGTTTCTTGAATCTGAGCAAAAAAGAAATAAAAATGGGCAGTTGTTTGAGCAAGAAGAATGTTTGTGCTTCTTCACCGCCTCCAGCGGTGCTTCCCGACCCACCGGAAAAGCTGAAACCC...

CDS

1 records

下载 CDS FASTA
LOC131020095
ATGGGCAGTTGTTTGAGCAAGAAGAATGTTTGTGCTTCTTCACCGCCTCCAGCGGTGCTTCCCGACCCACCGGAAAAGCTGAAACCCGAAGCCCAGCCGGAGAAGAAAGAAGAAACTGTCGTCAAGAAAGAGATTTTCATAATCAAACACCGCAAAAGCCACGAAGTCGAGCGGCAGAGATCGGAGCTGGAGGAGAAGGCGGAGGTGAAAAAAGTCGATGAATTCGTGGATAAGGGTAAGAATGCGAGCTCGAGCAACGG...

Protein

1 records

下载 Protein FASTA
XP_057804738.1
MGSCLSKKNVCASSPPPAVLPDPPEKLKPEAQPEKKEETVVKKEIFIIKHRKSHEVERQRSELEEKAEVKKVDEFVDKGKNASSSNGLDGGAAAVRTSSCTKEEVDAILIQCGRLSRSSSTGKAALSSERKYSGSKRSYDFDNENGRCDDNNADGDDEAVARERENRRRERRLSQGRRRTPSREREAAQQRSGSRERGGGRRVSRSPGRRSESPITTNSGTNSNSSAANANPRPGKLVSVPAMAMDKSTNAGGEAATGVK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器