当前解析结果
SmilChr04G002937| 统一新 Gene ID | SmilChr04G002937 |
|---|---|
| 名称 | SmilChr04G002937 |
| 描述 | ATP-dependent zinc metalloprotease FTSH 6, chloroplastic-like |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 45600380 - 45602789 / + |
| NCBI Gene ID | LOC131023745 |
|---|---|
| GeneID | 131023745 |
| locus_tag | - |
| NCBI Name | LOC131023745 |
| 原始查询 | SmilChr04G002937 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | ATP-dependent zinc metalloprotease FTSH 6, chloroplastic-like |
| 产物 | ATP-dependent zinc metalloprotease FTSH 6%2C chloroplastic-like |
| Arabidopsis | AT5G15250 (FTSH6)FTSH protease 6 [Source:NCBI gene (formerly Entrezgene);Acc:831377] identity=71.6; qcov=1; evalue=0; confidence=high |
| Rice | Os06g0669400 (OsFtsH2)- identity=70.6; qcov=0.946; evalue=0; confidence=high |
| GO | GO:0004176 (ATP-dependent peptidase activity); GO:0004222 (metalloendopeptidase activity); GO:0005524 (ATP binding); GO:0006508 (proteolysis); GO:0008270 (zinc ion binding); GO:0009534 (chloroplast thylakoid); GO:0016020 (membrane); GO:0016887 (ATP hydrolysis activity) |
| KEGG | - |
| Pfam | PF00004 (AAA); PF01434 (Peptidase_M41); PF06068 (TIP49); PF06480 (FtsH_ext); PF07728 (AAA_5); PF17862 (AAA_lid_3) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131023745 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 1.00000 | XP_057809291.1 |
| 2 | Chloroplast thylakoid | 类囊体 | 1.00000 | XP_057809291.1 |
| 3 | Chloroplast thylakoid membrane | 类囊体膜 | 1.00000 | XP_057809291.1 |
| 4 | Chloroplast membrane | 叶绿体膜 | 0.20000 | XP_057809291.1 |
| 5 | Nucleus | 细胞核 | 0.00000 | XP_057809291.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:45600522 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C80 |
Chr4:45600559 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C48,C82 |
Chr4:45600627 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A24,C42 |
Chr4:45600673 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr4:45600770 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C80 |
Chr4:45600850 |
AGT |
A |
2bp_deletion | frameshift_variant | 1 | C28 |
Chr4:45600850 |
AGT |
A |
2bp_deletion | CDS_variant | 1 | C28 |
Chr4:45600903 |
AG |
A |
1bp_deletion | frameshift_variant | 1 | B104 |
Chr4:45600903 |
AG |
A |
1bp_deletion | CDS_variant | 1 | B104 |
Chr4:45600922 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B54 |
Chr4:45601001 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C48,C82 |
Chr4:45601186 |
TGA |
T |
2bp_deletion | frameshift_variant | 1 | C38 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057809291.1PF06480
FtsH_ext 67-141 aa
PF06068
TIP49 238-274 aa
PF07728
AAA_5 239-362 aa
PF00004
AAA 240-374 aa
PF17862
AAA_lid_3 397-440 aa
PF01434
Peptidase_M41 456-644 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057809291.1 |
Pfam | PF06480 |
FtsH_ext | Family | 67 | 141 | 3.5e-08 | 34.3 | FtsH Extracellular |
XP_057809291.1 |
Pfam | PF06068 |
TIP49 | Domain | 238 | 274 | 1.5e-05 | 25.1 | TIP49 P-loop domain |
XP_057809291.1 |
Pfam | PF07728 |
AAA_5 | Domain | 239 | 362 | 5.5e-06 | 27.2 | AAA domain (dynein-related subfamily) |
XP_057809291.1 |
Pfam | PF00004 |
AAA | Domain | 240 | 374 | 6.2e-47 | 160.0 | ATPase family associated with various cellular activities (AAA) |
XP_057809291.1 |
Pfam | PF17862 |
AAA_lid_3 | Domain | 397 | 440 | 6.2e-13 | 48.7 | AAA+ lid domain |
XP_057809291.1 |
Pfam | PF01434 |
Peptidase_M41 | Domain | 456 | 644 | 1.1e-64 | 218.6 | Peptidase family M41 |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。