Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G002951`

染色体: Chr04 坐标: 45840095-45841620 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G002951`
名称	SmilChr04G002951
描述	pentatricopeptide repeat-containing protein At5g06540-like
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	45840095 - 45841620 / `-`

ID 对照

NCBI Gene ID	`LOC131023762`
GeneID	`131023762`
locus_tag	`-`
NCBI Name	`LOC131023762`
原始查询	`SmilChr04G002951`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	pentatricopeptide repeat-containing protein At5g06540-like
产物	pentatricopeptide repeat-containing protein At5g06540-like
Arabidopsis	`AT5G06540` (AT5G06540) Pentatricopeptide repeat (PPR) superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:830542] identity=36.5; qcov=1.01; evalue=8.12e-105; confidence=medium
Rice	`Os02g0830000` (OsSTA84) - identity=42.2; qcov=1.01; evalue=2.31e-119; confidence=medium
GO	GO:0003723 (RNA binding); GO:0005515 (protein binding); GO:0009451 (RNA modification)
KEGG	-
Pfam	PF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF20431 (E_motif)
InterPro	-
eggNOG	-
NR	GeneID:131023762

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057809323.1`
2	Nucleus	细胞核	0.00000	`XP_057809323.1`
3	Chromosome	染色体	0.00000	`XP_057809323.1`
4	Centromere	着丝粒	0.00000	`XP_057809323.1`
5	Chromatin	染色质	0.00000	`XP_057809323.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:45840268`	`C`	`CA`	1bp_insertion	frameshift_variant	89	A1,A13,A14,A21,A24,A5,A6,B101,B104,B109,B11,B111,B12,B121,B124,B130,B137,B138,B139,B140,B18,B21,B29,B3,B30,B32,B34,B39,B41,B43,B45,B49,B50,B52,B53,B56,B58,B6,B60,B63,B67,B69,B7,B70,B71,B72,B73,B76,B80,B82,B84,B90,B91,B93,B96,B99,C1,C11,C14,C17,C20,C25,C27,C28,C29,C3,C35,C37,C40,C43,C47,C5,C52,C54,C60,C63,C65,C68,C7,C72,C74,C79,C81,C85,C86,D11,D3,D5,D9
`Chr4:45840270`	`T`	`TC`	1bp_insertion	stop_gained,frameshift_variant	82	A13,A14,A21,A24,A5,A6,B104,B109,B11,B111,B12,B121,B124,B130,B137,B138,B139,B140,B18,B21,B29,B3,B30,B32,B34,B39,B41,B43,B45,B49,B50,B52,B53,B56,B6,B60,B63,B67,B69,B7,B70,B71,B76,B82,B84,B90,B91,B93,B99,C1,C11,C14,C17,C20,C25,C27,C28,C29,C3,C35,C37,C40,C43,C47,C5,C52,C54,C60,C63,C65,C68,C7,C72,C74,C79,C81,C85,C86,D11,D3,D5,D9
`Chr4:45840314`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C11,C69
`Chr4:45840426`	`AC`	`A`	1bp_deletion	frameshift_variant	1	C63
`Chr4:45840426`	`AC`	`A`	1bp_deletion	CDS_variant	1	C63
`Chr4:45840435`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A21,B20,C20,C71,C80
`Chr4:45840491`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B27,C11,C69
`Chr4:45840558`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B16
`Chr4:45840844`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B54,D6
`Chr4:45840857`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B90,B92,C20,C31,C81
`Chr4:45841023`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B107
`Chr4:45841069`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C48,C82

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057809323.1

496 aa

248

496

PPR_1

PPR_2

PPR

PPR_1

PPR_2

PPR_3

PPR

E_motif

PF12854 PPR_1 174-202 aa PF13041 PPR_2 174-206 aa PF01535 PPR 177-205 aa PF01535 PPR 209-237 aa PF01535 PPR 281-305 aa PF12854 PPR_1 305-335 aa PF13041 PPR_2 306-354 aa PF13812 PPR_3 307-353 aa PF01535 PPR 310-339 aa PF01535 PPR 344-371 aa PF01535 PPR 381-401 aa PF20431 E_motif 441-478 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057809323.1`	Pfam	`PF12854`	PPR_1	Repeat	174	202	4.5e-31	107.0	PPR repeat
`XP_057809323.1`	Pfam	`PF13041`	PPR_2	Repeat	174	206	7.5e-44	148.3	PPR repeat family
`XP_057809323.1`	Pfam	`PF01535`	PPR	Repeat	177	205	2e-46	153.7	PPR repeat
`XP_057809323.1`	Pfam	`PF01535`	PPR	Repeat	209	237	2e-46	153.7	PPR repeat
`XP_057809323.1`	Pfam	`PF01535`	PPR	Repeat	281	305	2e-46	153.7	PPR repeat
`XP_057809323.1`	Pfam	`PF12854`	PPR_1	Repeat	305	335	4.5e-31	107.0	PPR repeat
`XP_057809323.1`	Pfam	`PF13041`	PPR_2	Repeat	306	354	7.5e-44	148.3	PPR repeat family
`XP_057809323.1`	Pfam	`PF13812`	PPR_3	Repeat	307	353	4.7e-13	49.7	Pentatricopeptide repeat domain
`XP_057809323.1`	Pfam	`PF01535`	PPR	Repeat	310	339	2e-46	153.7	PPR repeat
`XP_057809323.1`	Pfam	`PF01535`	PPR	Repeat	344	371	2e-46	153.7	PPR repeat
`XP_057809323.1`	Pfam	`PF01535`	PPR	Repeat	381	401	2e-46	153.7	PPR repeat
`XP_057809323.1`	Pfam	`PF20431`	E_motif	Repeat	441	478	4.4e-10	40.4	E motif

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057953340.1
AATTTCAACTGATGCCCATATCTTCCTCCTCCCACCATTTAAAATCACTTCACCGAGCGCTGTCCCTCCTATATCAACAATGCTCAATCCCTCAACTCAAGCAGATCCACTCCAATCTAACTGTCTCCGGCGTAATCCTCGATTCCTTTTTCGTCGGAAAACTCAGTGCTCGTTTCGCGATTCTCGATTTCTCTCATGCGCTAGCCCTATTGCGCGTCTCGCCTCATCGCTCCGCATCCGCGTGGAACACTGCCATCAGA...

CDS

1 records

下载 CDS FASTA

LOC131023762
ATGCCCATATCTTCCTCCTCCCACCATTTAAAATCACTTCACCGAGCGCTGTCCCTCCTATATCAACAATGCTCAATCCCTCAACTCAAGCAGATCCACTCCAATCTAACTGTCTCCGGCGTAATCCTCGATTCCTTTTTCGTCGGAAAACTCAGTGCTCGTTTCGCGATTCTCGATTTCTCTCATGCGCTAGCCCTATTGCGCGTCTCGCCTCATCGCTCCGCATCCGCGTGGAACACTGCCATCAGAGCTTCATCCGA...

Protein

1 records

下载 Protein FASTA

XP_057809323.1
MPISSSSHHLKSLHRALSLLYQQCSIPQLKQIHSNLTVSGVILDSFFVGKLSARFAILDFSHALALLRVSPHRSASAWNTAIRASSENHRPETVFLLCKQMINGGFSPDNYTLSFIFRTCAELSDIIPASMCHTLVIKLGWERHDYVQNGLVHCYASCESIESARKVFDQSSNRDVITWTAVINGYLKSGELKHARELFDEMPNRNAASWSSMINGYAQMGMFAESLQTFKDMLVSGTQPNHSAIVGALSACAYLGALAQ...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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