当前解析结果
SmilChr04G002957| 统一新 Gene ID | SmilChr04G002957 |
|---|---|
| 名称 | SmilChr04G002957 |
| 描述 | uncharacterized SmilChr04G002957 |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 45931235 - 45935277 / + |
| NCBI Gene ID | LOC131023510 |
|---|---|
| GeneID | 131023510 |
| locus_tag | - |
| NCBI Name | LOC131023510 |
| 原始查询 | SmilChr04G002957 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os06g0704400; species=rice; confidence=low |
| 产物 | hit=Os06g0704400; species=rice; confidence=low |
| Arabidopsis | AT1G06740 (MUG3)MuDR family transposase [Source:NCBI gene (formerly Entrezgene);Acc:3766669] identity=26; qcov=0.679; evalue=3.02e-58; confidence=low |
| Rice | Os06g0704400- identity=33; qcov=0.792; evalue=3.95e-102; confidence=low |
| GO | GO:0008270 (zinc ion binding) |
| KEGG | - |
| Pfam | PF00872 (Transposase_mut); PF03108 (DBD_Tnp_Mut); PF04434 (SWIM); PF10551 (MULE); PF26130 (PB1-like) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131023510 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057809035.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057809035.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057809035.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057809035.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057809035.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:45931238 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B113 |
Chr4:45931293 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B104,B59 |
Chr4:45932722 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B72 |
Chr4:45932750 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B69,C5 |
Chr4:45932774 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B97 |
Chr4:45932777 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B100 |
Chr4:45932785 |
TG |
T |
1bp_deletion | frameshift_variant | 4 | B136,B139,C30,C41 |
Chr4:45932785 |
TG |
T |
1bp_deletion | CDS_variant | 4 | B136,B139,C30,C41 |
Chr4:45932804 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B112 |
Chr4:45932805 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B21,B80 |
Chr4:45932814 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A23,B102,B111 |
Chr4:45932820 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B85 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057809035.1PF26130
PB1-like 32-129 aa
PF03108
DBD_Tnp_Mut 283-345 aa
PF10551
MULE 474-569 aa
PF00872
Transposase_mut 491-620 aa
PF04434
SWIM 712-750 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057809035.1 |
Pfam | PF26130 |
PB1-like | Domain | 32 | 129 | 2.7e-10 | 41.1 | PB1-like domain |
XP_057809035.1 |
Pfam | PF03108 |
DBD_Tnp_Mut | Family | 283 | 345 | 3.6e-06 | 27.3 | MuDR family transposase |
XP_057809035.1 |
Pfam | PF10551 |
MULE | Domain | 474 | 569 | 2.3e-17 | 63.9 | MULE transposase domain |
XP_057809035.1 |
Pfam | PF00872 |
Transposase_mut | Family | 491 | 620 | 1e-05 | 25.3 | Transposase, Mutator family |
XP_057809035.1 |
Pfam | PF04434 |
SWIM | Domain | 712 | 750 | 1e-05 | 25.6 | SWIM zinc finger |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。