Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G002973`

染色体: Chr04 坐标: 46096390-46099662 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G002973`
名称	SmilChr04G002973
描述	protein FAR1-RELATED SEQUENCE 5-like
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	46096390 - 46099662 / `-`

ID 对照

NCBI Gene ID	`LOC131023778`
GeneID	`131023778`
locus_tag	`-`
NCBI Name	`LOC131023778`
原始查询	`SmilChr04G002973`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein FAR1-RELATED SEQUENCE 5-like
产物	protein FAR1-RELATED SEQUENCE 5-like
Arabidopsis	`AT4G38180` (FRS5) FAR1-related sequence 5 [Source:NCBI gene (formerly Entrezgene);Acc:829974] identity=35.6; qcov=0.766; evalue=4.99e-127; confidence=medium
Rice	`Os07g0615900` - identity=42.4; qcov=0.78; evalue=1.06e-178; confidence=medium
GO	GO:0006355 (regulation of DNA-templated transcription); GO:0008270 (zinc ion binding)
KEGG	-
Pfam	PF03101 (FAR1); PF04434 (SWIM); PF10551 (MULE); PF21056 (ZSWIM1-3_RNaseH-like)
InterPro	-
eggNOG	-
NR	GeneID:131023778

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057809346.1`
2	Chromosome	染色体	0.00000	`XP_057809346.1`
3	Centromere	着丝粒	0.00000	`XP_057809346.1`
4	Chromatin	染色质	0.00000	`XP_057809346.1`
5	Telomere	端粒	0.00000	`XP_057809346.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:46096709`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B5,C77
`Chr4:46096926`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B54,D6
`Chr4:46096927`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A21,B20,C10
`Chr4:46096928`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B35,B54,C37,D6
`Chr4:46096969`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C58
`Chr4:46097547`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B5,C77
`Chr4:46097559`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B35,C37
`Chr4:46097568`	`C`	`CT`	1bp_insertion	frameshift_variant	6	B18,B53,B68,B69,C76,D8
`Chr4:46097583`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A21,B20,C10
`Chr4:46097596`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B5,C77
`Chr4:46097625`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B5,C77
`Chr4:46097650`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057809346.1

738 aa

369

738

FAR1

ZSWIM1-3_RNaseH-like

MULE

SWIM

PF03101 FAR1 11-97 aa PF21056 ZSWIM1-3_RNaseH-like 185-302 aa PF10551 MULE 220-314 aa PF04434 SWIM 507-536 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057809346.1`	Pfam	`PF03101`	FAR1	Domain	11	97	5.4e-21	75.8	FAR1 DNA-binding domain
`XP_057809346.1`	Pfam	`PF21056`	ZSWIM1-3_RNaseH-like	Domain	185	302	3.1e-12	47.3	Zinc finger SWIM domain-containing protein 1/3, RNaseH-like domain
`XP_057809346.1`	Pfam	`PF10551`	MULE	Domain	220	314	4.7e-28	98.1	MULE transposase domain
`XP_057809346.1`	Pfam	`PF04434`	SWIM	Domain	507	536	1.2e-07	31.8	SWIM zinc finger

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XR_009101522.1
ATAATCAACTTCATAGTGATATGGTAGATGAGGACAGGATGAATCAATTGGTTGAAGATATCCAAAGATTGGTATGAGTTTTGATACTGAAGATGATGTCTATGAATTTTATCTAAAGTATTCAAAACGTGTGGGCTTTGGTATAAGAAGAAGCAAAAGTCACAAGAACAAATTTGGAGAATTAGTTGACAGAATATTTTGTTGTAGTGCTCAAGGAAAAAGATCACATGATAAACGTGATATTTATGTGAAAAATGCTC...

XR_009101523.1
ATAATCAACTTCATAGTGATATGGTAGATGAGGACAGGATGAATCAATTGGTTGAAGATATCCAAAGATTGGTATGAGTTTTGATACTGAAGATGATGTCTATGAATTTTATCTAAAGTATTCAAAACGTGTGGGCTTTGGTATAAGAAGAAGCAAAAGTCACAAGAACAAATTTGGAGAATTAGTTGACAGAATATTTTGTTGTAGTGCTCAAGGAAAAAGATCACATGATAAACGTGATATTTATGTGAAAAATGCTC...

CDS

1 records

下载 CDS FASTA

LOC131023778
ATGAGTTTTGATACTGAAGATGATGTCTATGAATTTTATCTAAAGTATTCAAAACGTGTGGGCTTTGGTATAAGAAGAAGCAAAAGTCACAAGAACAAATTTGGAGAATTAGTTGACAGAATATTTTGTTGTAGTGCTCAAGGAAAAAGATCACATGATAAACGTGATATTTATGTGAAAAATGCTCGTCCAGAAACAAGATTTGACTGTCAAGCTAAACTGAAGGTTAGCAGCCGGGAAACTGGAAAGCTTTGTGTGGT...

Protein

1 records

下载 Protein FASTA

XP_057809346.1
MSFDTEDDVYEFYLKYSKRVGFGIRRSKSHKNKFGELVDRIFCCSAQGKRSHDKRDIYVKNARPETRFDCQAKLKVSSRETGKLCVVQFVEEHNHYLSSPNKIHLHKSHRKIAPVAALQIQMANDVGITPKASHDLMARQVGGRENLGFIPDDYKNYLRSKRTRDSRIGDTGGVLEYMQKMQFDDPNFFYAIQVDEDDLITNIFWSDARMRTDYSYFVDVVCFDTTYRKNNEGRPIALFVGVNHQKLTVIFGAALLYDET...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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