当前解析结果
SmilChr04G002982| 统一新 Gene ID | SmilChr04G002982 |
|---|---|
| 名称 | SmilChr04G002982 |
| 描述 | uncharacterized SmilChr04G002982 |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 46243365 - 46254252 / + |
| NCBI Gene ID | LOC131023777 |
|---|---|
| GeneID | 131023777 |
| locus_tag | - |
| NCBI Name | LOC131023777 |
| 原始查询 | SmilChr04G002982 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Calcium-binding EF hand family protein [Source:NCBI gene (formerly Entrezgene);Acc:838765]; symbol=AT1G21630; hit=AT1G21630; species=arabidopsis; confidence=high |
| 产物 | Calcium-binding EF hand family protein [Source:NCBI gene (formerly Entrezgene);Acc:838765]; symbol=AT1G21630; hit=AT1G21630; species=arabidopsis; confidence=high |
| Arabidopsis | AT1G21630 (AT1G21630)Calcium-binding EF hand family protein [Source:NCBI gene (formerly Entrezgene);Acc:838765] identity=45.5; qcov=1.11; evalue=0; confidence=high |
| Rice | Os06g0728600- identity=43.2; qcov=0.824; evalue=0; confidence=medium |
| GO | GO:0005509 (calcium ion binding); GO:0005515 (protein binding); GO:0005634 (nucleus); GO:0005737 (cytoplasm); GO:0005886 (plasma membrane); GO:0006897 (endocytosis); GO:0016197 (endosomal transport) |
| KEGG | - |
| Pfam | PF12763 (EH); PF13202 (EF-hand_5) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131023777 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Golgi apparatus | 高尔基体 | 1.00000 | XP_057809345.1 |
| 2 | Trans-golgi network | Trans-golgi network | 1.00000 | XP_057809345.1 |
| 3 | Vesicle | 囊泡 | 0.60000 | XP_057809345.1 |
| 4 | Cytoplasmic vesicle | 细胞质囊泡 | 0.40000 | XP_057809345.1 |
| 5 | Clathrin-coated vesicle | Clathrin-coated vesicle | 0.40000 | XP_057809345.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:46245070 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B81,C6 |
Chr4:46245535 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B52 |
Chr4:46245585 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A21,B20,C10 |
Chr4:46245641 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A23,B69 |
Chr4:46245757 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B108,B59,C1,C3 |
Chr4:46245803 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B49 |
Chr4:46245985 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A21,B20,C10 |
Chr4:46247030 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B91,C71 |
Chr4:46247072 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B108 |
Chr4:46247185 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B5,C2,C67,C77 |
Chr4:46247528 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B114 |
Chr4:46252474 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057809345.1PF12763
EH 9-77 aa
PF13202
EF-hand_5 12-30 aa
PF12763
EH 370-444 aa
PF13202
EF-hand_5 378-391 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057809345.1 |
Pfam | PF12763 |
EH | Domain | 9 | 77 | 6e-26 | 91.0 | EH domain |
XP_057809345.1 |
Pfam | PF13202 |
EF-hand_5 | Domain | 12 | 30 | 6.7e-08 | 32.4 | EF hand |
XP_057809345.1 |
Pfam | PF12763 |
EH | Domain | 370 | 444 | 6e-26 | 91.0 | EH domain |
XP_057809345.1 |
Pfam | PF13202 |
EF-hand_5 | Domain | 378 | 391 | 6.7e-08 | 32.4 | EF hand |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。