Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G003034`

染色体: Chr04 坐标: 46821711-46828346 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G003034`
名称	SmilChr04G003034
描述	LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.4
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	46821711 - 46828346 / `+`

ID 对照

NCBI Gene ID	`LOC131023833`
GeneID	`131023833`
locus_tag	`-`
NCBI Name	`LOC131023833`
原始查询	`SmilChr04G003034`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.4
产物	LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.4
Arabidopsis	`AT1G66880` (AT1G66880) Protein kinase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:843006] identity=48.5; qcov=0.963; evalue=0; confidence=high
Rice	`Os01g0689900` (OsWAK10) - identity=43.1; qcov=1.04; evalue=1.47e-163; confidence=medium
GO	GO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation); GO:0030247 (polysaccharide binding)
KEGG	-
Pfam	PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr); PF13947 (GUB_WAK_bind); PF14380 (WAK_assoc)
InterPro	-
eggNOG	-
NR	GeneID:131023833

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057809426.1`
2	Nucleus	细胞核	0.00000	`XP_057809426.1`
3	Chromosome	染色体	0.00000	`XP_057809426.1`
4	Centromere	着丝粒	0.00000	`XP_057809426.1`
5	Chromatin	染色质	0.00000	`XP_057809426.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:46821876`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A3,B46
`Chr4:46822006`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B44
`Chr4:46822124`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C19
`Chr4:46822259`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B4,C29,C56,C57
`Chr4:46822352`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C27
`Chr4:46825708`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B128,B89,C57
`Chr4:46826883`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B47
`Chr4:46827074`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B3,C3

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057809426.1

685 aa

342

685

GUB_WAK_bind

WAK_assoc

Pkinase

PK_Tyr_Ser-Thr

PF13947 GUB_WAK_bind 25-88 aa PF14380 WAK_assoc 179-250 aa PF00069 Pkinase 374-641 aa PF07714 PK_Tyr_Ser-Thr 374-642 aa

XP_057809427.1

669 aa

334

669

GUB_WAK_bind

WAK_assoc

Pkinase

PK_Tyr_Ser-Thr

PF13947 GUB_WAK_bind 28-95 aa PF14380 WAK_assoc 164-230 aa PF00069 Pkinase 358-625 aa PF07714 PK_Tyr_Ser-Thr 358-626 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057809426.1`	Pfam	`PF13947`	GUB_WAK_bind	Domain	25	88	8.9e-14	52.3	Wall-associated receptor kinase galacturonan-binding
`XP_057809426.1`	Pfam	`PF14380`	WAK_assoc	Domain	179	250	1.3e-14	55.4	Wall-associated receptor kinase C-terminal
`XP_057809426.1`	Pfam	`PF00069`	Pkinase	Domain	374	641	1.2e-49	169.8	Protein kinase domain
`XP_057809426.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	374	642	6e-49	167.4	Protein tyrosine and serine/threonine kinase
`XP_057809427.1`	Pfam	`PF13947`	GUB_WAK_bind	Domain	28	95	7.7e-14	52.5	Wall-associated receptor kinase galacturonan-binding
`XP_057809427.1`	Pfam	`PF14380`	WAK_assoc	Domain	164	230	2.8e-15	57.5	Wall-associated receptor kinase C-terminal
`XP_057809427.1`	Pfam	`PF00069`	Pkinase	Domain	358	625	7.3e-50	170.5	Protein kinase domain
`XP_057809427.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	358	626	5.7e-49	167.5	Protein tyrosine and serine/threonine kinase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057953444.1
TACCAACCTCCCCCATTTAAAAAATTTCTTCCTCAAGATTCCCTCCAACCACTGCCTAATTAGAGTCGCAAACCCCATCGTCGCCCCCCACGCCTCCCCTCCAAATGATCTCCTGGCTTTCCTTCCTCCTCATCCTCAAATTCTCCATCGGATCGAGCGACTCCGGCAGCGAATTGTACCGGAAATGCAGCAACACCTTCAGCTGCGGCGGCAACATCACCGGAATCGGTTACCCCTTCCGGGGAGCCGGCGATCCGGAG...

XM_057953443.1
GATTTGGAGTGAGACGGTATTGATGGAAGGACTTGTTTTGATTAGTGTTGACCAAGTCTAGCTTCTACCTTAAAAAATGCAAGTTATAGAAAGGGAGAGGAAGTAGATATCTTTTGTTGTCATGTAACTTAAACACTAGATTAACACTCAAGATATATATCAAAAAGGCCCCACCAACTACGCCCACCACCTAATTACGTATACAAGAAGAAGATTTACATATATTATACATGTACATAGATATATTTAATATAGAAGCA...

CDS

2 records

下载 CDS FASTA

LOC131023833
ATGATCTCCTGGCTTTCCTTCCTCCTCATCCTCAAATTCTCCATCGGATCGAGCGACTCCGGCAGCGAATTGTACCGGAAATGCAGCAACACCTTCAGCTGCGGCGGCAACATCACCGGAATCGGTTACCCCTTCCGGGGAGCCGGCGATCCGGAGTACTGCGGCCATCGCAGTTTAGTCCTGAGCTGCGACGAGCGGCGCAATGTGACCAACATCGACATCATGGATCTGAGATATCGCGTGCTGGAAATGGACGGTAG...

LOC131023833
ATGCCCCTCCTCCTCATTCTCGCCGCCGCCCTCTTCGCGGCGGCGCATTGCCAGTCCGACACCTACGCCAACTGTGACCGCACCTTCTCATGCGGCTCCATCACCAACATAACATTCCCTTTCCACGGCGGCGACCGCCCCCCCTACTGCGGCCTCCCCGACTTCGCCCTGGCCTGCCGCGACGGCAACACCACCGAGCTGGCTCACACCTCAGCCGCCTACCGCGTCCTCCGACTCAATCAGACTGAGAAGTCACTCGT...

Protein

2 records

下载 Protein FASTA

XP_057809426.1
MPLLLILAAALFAAAHCQSDTYANCDRTFSCGSITNITFPFHGGDRPPYCGLPDFALACRDGNTTELAHTSAAYRVLRLNQTEKSLVLAHSDLYSNTCPSDFRNITLGSPYFYYNLTQNEELTMFYGCNTSRLSSAGNNASELSITRDNRIRCNSTDLNYTGAFYWIGPVPSDPILSIISCNISVRMPMLRAAGDLLTNSTINLGEALMEGFDVSYSVQDESLCSECNRMSGQCGFSAETDKLICICGDKLCPFALTPPP...

XP_057809427.1
MISWLSFLLILKFSIGSSDSGSELYRKCSNTFSCGGNITGIGYPFRGAGDPEYCGHRSLVLSCDERRNVTNIDIMDLRYRVLEMDGSSQTMRIAREDTMSSACPSVMANTTLDYSVFDYASSCMNYTFLYGCPFNPGFLMHVPCGGDAGGAYVLPGAAVGPKDCDASVIVSGALVAINEPLGTPELGEALKHGFQIRWKMESKSCSDCTASQGRCGYDLTTNKTVCYCRDPPYVSDACTVTDYRSPPKSKGSRNTERSIG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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