Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G003039`

染色体: Chr04 坐标: 46891367-46893650 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G003039`
名称	SmilChr04G003039
描述	protein DETOXIFICATION 14-like
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	46891367 - 46893650 / `-`

ID 对照

NCBI Gene ID	`LOC131023836`
GeneID	`131023836`
locus_tag	`-`
NCBI Name	`LOC131023836`
原始查询	`SmilChr04G003039`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein DETOXIFICATION 14-like
产物	protein DETOXIFICATION 14-like
Arabidopsis	`AT1G71140` (AT1G71140) MATE efflux family protein [Source:NCBI gene (formerly Entrezgene);Acc:843454] identity=51.5; qcov=1.02; evalue=1.54e-171; confidence=high
Rice	`Os01g0684900` - identity=52.2; qcov=0.985; evalue=2.72e-163; confidence=high
GO	GO:0015297 (antiporter activity); GO:0016020 (membrane); GO:0042910 (xenobiotic transmembrane transporter activity); GO:1990961 (xenobiotic detoxification by transmembrane export across the plasma membrane)
KEGG	-
Pfam	PF01554 (MatE)
InterPro	-
eggNOG	-
NR	GeneID:131023836

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	0.80000	`XP_057809429.1`
2	Vacuole	液泡	0.60000	`XP_057809429.1`
3	Vacuole membrane	液泡膜	0.60000	`XP_057809429.1`
4	Nucleus	细胞核	0.00000	`XP_057809429.1`
5	Chromosome	染色体	0.00000	`XP_057809429.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:46891916`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C15
`Chr4:46892431`	`C`	`T`	EMS_canonical_SNV	stop_gained	3	C22,C26,D3
`Chr4:46892431`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	C22,C26,D3
`Chr4:46892432`	`C`	`T`	EMS_canonical_SNV	stop_gained	3	C22,C26,D3
`Chr4:46892432`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	C22,C26,D3
`Chr4:46892436`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	C22,C26,D3
`Chr4:46892535`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B140
`Chr4:46892545`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A3,B1,B46,C14,C85
`Chr4:46892839`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C69,D10

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057809429.1

474 aa

237

474

MatE

PF01554 MatE 33-192 aa PF01554 MatE 254-416 aa

XP_057809430.1

455 aa

228

455

MatE

PF01554 MatE 33-192 aa PF01554 MatE 290-397 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057809429.1`	Pfam	`PF01554`	MatE	Family	33	192	3.7e-60	203.0	MatE
`XP_057809429.1`	Pfam	`PF01554`	MatE	Family	254	416	3.7e-60	203.0	MatE
`XP_057809430.1`	Pfam	`PF01554`	MatE	Family	33	192	6.7e-51	172.9	MatE
`XP_057809430.1`	Pfam	`PF01554`	MatE	Family	290	397	6.7e-51	172.9	MatE

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057953447.1
TGAAGGAAAATTTAAGCATTAAAAGCCTCTAAACAATGAAAATATCTGTGTTTCCTTTTCATCGGGGGTGGGGATAAAACACAAAGATGAGGAGACCGCACTTGTTGAAATACAAAGAATTTTCTCATACGGTTTTGATCCTCGTCTCGTGCATCAAGGCGTAAACAGTCTGGTCAATGTTCCGTTGCTCATCACCTCGAACCACGAGCATTCACAGCTACTTCAAAAATCTGCCTTTATTTTGTGAAGACCATGACTTG...

XM_057953446.1
GAAGGAAAATTTAAGCATTAAAAGCCTCTAAACAATGAAAATATCTGTGTTTCCTTTTCATCGGGGGTGGGGATAAAACACAAAGATGAGGAGACCGCACTTGTTGAAATACAAAGAATTTTCTCATACGGTTTTGATCCTCGTCTCGTGCATCAAGGCGTAAACAGTCTGGTCAATGTTCCGTTGCTCATCACCTCGAACCACGAGCATTCACAGCTACTTCAAAAATCTGCCTTTATTTTGTGAAGACCATGACTTGA...

CDS

2 records

下载 CDS FASTA

LOC131023836
ATGGAAGAGGGAGAGCCCCTTCTTGACGAAAAAATCGTTGGTACAAAATGGGAGGTTTTGGTGGAAGAGGTGAGAAGGCTAAGCTACATAGCCATGCCCATGGTGGTTGTGTCGGTGTCGCAGTACCTGTTGCGGGCGGCCTCCATGATGATGCTCGGCCATCTCGGCGAACTCGCTCTTTCCAGCGCCGCCATCGCCACTTCTCTTTCCAACGTCACAGGATTCAGCCTCCTCTCTGGAATGGCTTGTGCACTCGAGAC...

Protein

2 records

下载 Protein FASTA

XP_057809429.1
MEEGEPLLDEKIVGTKWEVLVEEVRRLSYIAMPMVVVSVSQYLLRAASMMMLGHLGELALSSAAIATSLSNVTGFSLLSGMACALETLCGQAYGAGQYRKLSTYTYGATVGLFLACIPVSLVWIYTENILLLTGQDPAISAEAGNYSIWLIPSLFPYAILQSLVRFLQTQSLILPMLFSTLATLLIHLPISWAFIFKTDLGSAGAALSIGVSYWLNVIFLGLYVNYSPKCAKTRASFSKDVFWTMGEFFRFAIPSAVMVC...

XP_057809430.1
MEEGEPLLDEKIVGTKWEVLVEEVRRLSYIAMPMVVVSVSQYLLRAASMMMLGHLGELALSSAAIATSLSNVTGFSLLSGMACALETLCGQAYGAGQYRKLSTYTYGATVGLFLACIPVSLVWIYTENILLLTGQDPAISAEAGNYSIWLIPSLFPYAILQSLVRFLQTQSLILPMLFSTLATLLIHLPISWAFIFKTDLGSAGAALSIGVSYWLNVIFLGLYVNYSPKCAKTRASFSKDVFWTMGEFFRFAIPSAVMVC...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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