Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G003050`

染色体: Chr04 坐标: 47044361-47046574 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G003050`
名称	SmilChr04G003050
描述	protein DETOXIFICATION 12-like
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	47044361 - 47046574 / `+`

ID 对照

NCBI Gene ID	`LOC131023847`
GeneID	`131023847`
locus_tag	`-`
NCBI Name	`LOC131023847`
原始查询	`SmilChr04G003050`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein DETOXIFICATION 12-like
产物	protein DETOXIFICATION 12-like
Arabidopsis	`AT1G15170` (AT1G15170) MATE efflux family protein [Source:NCBI gene (formerly Entrezgene);Acc:838083] identity=52.5; qcov=1; evalue=5.15e-169; confidence=high
Rice	`Os01g0684900` - identity=55.4; qcov=0.998; evalue=4.13e-179; confidence=high
GO	GO:0015297 (antiporter activity); GO:0016020 (membrane); GO:0042910 (xenobiotic transmembrane transporter activity); GO:1990961 (xenobiotic detoxification by transmembrane export across the plasma membrane)
KEGG	-
Pfam	PF01554 (MatE)
InterPro	-
eggNOG	-
NR	GeneID:131023847

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	0.80000	`XP_057809441.1`
2	Vacuole	液泡	0.40000	`XP_057809441.1`
3	Vacuole membrane	液泡膜	0.40000	`XP_057809441.1`
4	Nucleus	细胞核	0.00000	`XP_057809441.1`
5	Chromosome	染色体	0.00000	`XP_057809441.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:47044859`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B74,C28
`Chr4:47044877`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B59
`Chr4:47044927`	`TG`	`T`	1bp_deletion	frameshift_variant	1	B49
`Chr4:47044927`	`TG`	`T`	1bp_deletion	CDS_variant	1	B49
`Chr4:47045004`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B10,C51,C62
`Chr4:47045262`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A21,B20,C37
`Chr4:47045814`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B4
`Chr4:47045830`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B21
`Chr4:47045840`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B59
`Chr4:47045841`	`CA`	`C`	1bp_deletion	frameshift_variant	6	A1,B21,B32,B4,B73,C50
`Chr4:47046147`	`TTC`	`T`	2bp_deletion	frameshift_variant	2	B101,B127
`Chr4:47046147`	`TTC`	`T`	2bp_deletion	CDS_variant	2	B101,B127

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057809441.1

483 aa

242

483

MatE

PF01554 MatE 24-183 aa PF01554 MatE 245-406 aa

XP_057809442.1

463 aa

232

463

MatE

PF01554 MatE 24-183 aa PF01554 MatE 245-406 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057809441.1`	Pfam	`PF01554`	MatE	Family	24	183	4.1e-56	189.8	MatE
`XP_057809441.1`	Pfam	`PF01554`	MatE	Family	245	406	4.1e-56	189.8	MatE
`XP_057809442.1`	Pfam	`PF01554`	MatE	Family	24	183	3.4e-56	190.1	MatE
`XP_057809442.1`	Pfam	`PF01554`	MatE	Family	245	406	3.4e-56	190.1	MatE

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057953459.1
AGCACACCCACGTACATTATGACTGAGTTTATAAACTCCTTAAAATAACTTACGCAAACTAATACCCCTTATATATTTGGGGGTCTTCCAACTATACAAGTAGAGAAACCAGCGCGTGTGTAGAAAAATGAGAGGAGAAGGCAAGAAATGGGAGGATTTGATGCAACAAGTGAAGAAAGTTGGGTACATAGCTGGGCCGATGGTGTTGGTATCGATGTTGCAGTATCTGCTGCAAGTGGTTTCCACGATGATGGTCGGCC...

XM_057953458.1
AACTTACGCAAACTAATACCCCTTATATATTTGGGGGTCTTCCAACTATACAAGTAGAGAAACCAGCGCGTGTGTAGAAAAATGAGAGGAGAAGGCAAGAAATGGGAGGATTTGATGCAACAAGTGAAGAAAGTTGGGTACATAGCTGGGCCGATGGTGTTGGTATCGATGTTGCAGTATCTGCTGCAAGTGGTTTCCACGATGATGGTCGGCCACCTCGGCCGCCTCACGCTATCAAGCGTCGCCATCGCCACTTCTCT...

CDS

2 records

下载 CDS FASTA

LOC131023847
ATGAGAGGAGAAGGCAAGAAATGGGAGGATTTGATGCAACAAGTGAAGAAAGTTGGGTACATAGCTGGGCCGATGGTGTTGGTATCGATGTTGCAGTATCTGCTGCAAGTGGTTTCCACGATGATGGTCGGCCACCTCGGCCGCCTCACGCTATCAAGCGTCGCCATCGCCACTTCTCTGACCAATGTCACCGGTTTCAGCCTTCTCTCAGGGCTGGTTGGCGGCTTGGAAACTCTGTGCGGGCAGGCCTACGGCGCGGG...

Protein

2 records

下载 Protein FASTA

XP_057809441.1
MRGEGKKWEDLMQQVKKVGYIAGPMVLVSMLQYLLQVVSTMMVGHLGRLTLSSVAIATSLTNVTGFSLLSGLVGGLETLCGQAYGAGQYQKLGVYTYSAVFSLAAVCIPVSLAWVLMEKLLVAMGQDPLVSLQARDYSLRLIPALFAAAVSKPLVRYLQTQSLVLPMVVSSFVVLCCHIPTTWALVYKLDMGSSGAATAVCISNWLYVFVLAVYIRYSPSCKATRLAFSVEAFRHIGEFFRFAAPSAVMVCLKWWSLEVL...

XP_057809442.1
MRGEGKKWEDLMQQVKKVGYIAGPMVLVSMLQYLLQVVSTMMVGHLGRLTLSSVAIATSLTNVTGFSLLSGLVGGLETLCGQAYGAGQYQKLGVYTYSAVFSLAAVCIPVSLAWVLMEKLLVAMGQDPLVSLQARDYSLRLIPALFAAAVSKPLVRYLQTQSLVLPMVVSSFVVLCCHIPTTWALVYKLDMGSSGAATAVCISNWLYVFVLAVYIRYSPSCKATRLAFSVEAFRHIGEFFRFAAPSAVMVCLKWWSLEVL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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