Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G003054`

染色体: Chr04 坐标: 47102009-47106581 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G003054`
名称	SmilChr04G003054
描述	uncharacterized SmilChr04G003054
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	47102009 - 47106581 / `-`

ID 对照

NCBI Gene ID	`LOC131023851`
GeneID	`131023851`
locus_tag	`-`
NCBI Name	`LOC131023851`
原始查询	`SmilChr04G003054`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	DnaA initiator-associating protein [Source:NCBI gene (formerly Entrezgene);Acc:843024]; symbol=TRM22; hit=AT1G67040; species=arabidopsis; confidence=low
产物	DnaA initiator-associating protein [Source:NCBI gene (formerly Entrezgene);Acc:843024]; symbol=TRM22; hit=AT1G67040; species=arabidopsis; confidence=low
Arabidopsis	`AT1G67040` (TRM22) DnaA initiator-associating protein [Source:NCBI gene (formerly Entrezgene);Acc:843024] identity=30.1; qcov=1.04; evalue=5.3e-72; confidence=low
Rice	`Os03g0302900` (SSD1) - identity=30.8; qcov=0.255; evalue=8.29e-15; confidence=weak
GO	-
KEGG	-
Pfam	PF14309 (DUF4378); PF14383 (VARLMGL)
InterPro	-
eggNOG	-
NR	GeneID:131023851

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	0.80000	`XP_057809446.1`
2	Nucleus	细胞核	0.40000	`XP_057809446.1`
3	Cytoskeleton	细胞骨架	0.40000	`XP_057809448.1`
4	Cytoplasm	细胞质	0.20000	`XP_057809446.1`
5	Cytosol	细胞质基质	0.20000	`XP_057809450.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:47102293`	`TC`	`T`	1bp_deletion	frameshift_variant	1	B83
`Chr4:47102293`	`TC`	`T`	1bp_deletion	CDS_variant	1	B83
`Chr4:47102322`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B126,B55,C2
`Chr4:47102377`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B3,C6,C71
`Chr4:47102514`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr4:47102600`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr4:47102950`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B52,C49
`Chr4:47103003`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C49
`Chr4:47103691`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B119,C22
`Chr4:47104220`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B122
`Chr4:47104470`	`T`	`TA`	1bp_insertion	frameshift_variant	2	B35,C23
`Chr4:47104470`	`T`	`TA`	1bp_insertion	CDS_variant	2	B35,C23

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057809446.1

936 aa

468

936

VARLMGL

DUF4378

PF14383 VARLMGL 109-135 aa PF14309 DUF4378 771-928 aa

XP_057809448.1

923 aa

462

923

VARLMGL

DUF4378

PF14383 VARLMGL 96-122 aa PF14309 DUF4378 758-915 aa

XP_057809449.1

923 aa

462

923

VARLMGL

DUF4378

PF14383 VARLMGL 96-122 aa PF14309 DUF4378 758-915 aa

XP_057809450.1

889 aa

444

889

VARLMGL

DUF4378

PF14383 VARLMGL 109-135 aa PF14309 DUF4378 724-881 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057809446.1`	Pfam	`PF14383`	VARLMGL	Domain	109	135	1.3e-11	44.5	DUF761-associated sequence motif
`XP_057809446.1`	Pfam	`PF14309`	DUF4378	Domain	771	928	6.9e-12	46.7	LONGIFOLIA 1/2-like C-terminal domain
`XP_057809448.1`	Pfam	`PF14383`	VARLMGL	Domain	96	122	1.3e-11	44.5	DUF761-associated sequence motif
`XP_057809448.1`	Pfam	`PF14309`	DUF4378	Domain	758	915	6.6e-12	46.8	LONGIFOLIA 1/2-like C-terminal domain
`XP_057809449.1`	Pfam	`PF14383`	VARLMGL	Domain	96	122	1.3e-11	44.5	DUF761-associated sequence motif
`XP_057809449.1`	Pfam	`PF14309`	DUF4378	Domain	758	915	6.6e-12	46.8	LONGIFOLIA 1/2-like C-terminal domain
`XP_057809450.1`	Pfam	`PF14383`	VARLMGL	Domain	109	135	1.2e-11	44.6	DUF761-associated sequence motif
`XP_057809450.1`	Pfam	`PF14309`	DUF4378	Domain	724	881	5.9e-12	47.0	LONGIFOLIA 1/2-like C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057953467.1
TTGAACAATTTGTAGACCGAGTGGCATTCCGTCTTATCTTTCCTAACTTCTCTCCTCACTGTCACACACTACTGTGATCTGAGGAGCAGCCGTTTTCACCAGCGCAGCTTTGTCAGCTGCCGAACCAAAATCCCTCCACTCAGACCTCCTTCTTTTTCAATTTTTTCTCCCAAACACACTCTATTGTTTCCTGTACTTGTCGAGATTCTTAGTAGAGTATTAATTTCCAGATGATTATGCCTTTTAGCTCCCCATGATTC...

XM_057953463.1
TGAACAATTTGTAGACCGAGTGGCATTCCGTCTTATCTTTCCTAACTTCTCTCCTCACTGTCACACACTACTGTGATCTGAGGAGCAGCCGTTTTCACCAGCGCAGCTTTGTCAGCTGCCGAACCAAAATCCCTCCACTCAGACCTCCTTCTTTTTCAATTTTTTCTCCCAAACACACTCTATTGTTTCCTGTACTTGTCGAGATTCTTAGTAGAGTATTAATTTCCAGATGATTATGCCTTTTAGCTCCCCATGATTCA...

CDS

4 records

下载 CDS FASTA

LOC131023851
ATGATTCATAATCATTCCAGCGACCCTTTAAAAACTTACCATATTATATCTGTGGAGAAAGCGGCGTCGTCTTTGGCAATTGTGGAGAAGAAGCCGCAGAGGCCTGGTGGATGTGTTGGTATCTTCTTTCAACTTTTTGATTGGAATCGTAGATTCGCGAAAAAGAAGCTTTTTTCCAAGAAATTACTACCACCAGTTCGATTCAAACAAGCTTCGAAGAAATTTGGTGGGGATGAGAAGCAGCCGAAGCTTCGTTTGAT...

Protein

4 records

下载 Protein FASTA

XP_057809446.1
MIHNHSSDPLKTYHIISVEKAASSLAIVEKKPQRPGGCVGIFFQLFDWNRRFAKKKLFSKKLLPPVRFKQASKKFGGDEKQPKLRLIADENNGGFPTAKMSNGAAIVDNEQKHEMHVPGLVARLMGLDSMPALQRDKSKKAPASGVVLREAEELVDKREELKGGIKHEVRPQKLQKTSGCERQPITRFGTEKLPFKNVLSKSRKQHHPKLPSPVKTPKNLSRKRPSKLIGAATRILEPGLQTSRSRCALTYSNASRDSPQ...

XP_057809448.1
MNDTVEKAASSLAIVEKKPQRPGGCVGIFFQLFDWNRRFAKKKLFSKKLLPPVRFKQASKKFGGDEKQPKLRLIADENNGGFPTAKMSNGAAIVDNEQKHEMHVPGLVARLMGLDSMPALQRDKSKKAPASGVVLREAEELVDKREELKGGIKHEVRPQKLQKTSGCERQPITRFGTEKLPFKNVLSKSRKQHHPKLPSPVKTPKNLSRKRPSKLIGAATRILEPGLQTSRSRCALTYSNASRDSPQDTDMEGRTRSLPS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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