Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G003061`

染色体: Chr04 坐标: 47178145-47181201 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G003061`
名称	SmilChr04G003061
描述	uncharacterized SmilChr04G003061
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	47178145 - 47181201 / `-`

ID 对照

NCBI Gene ID	`LOC131023857`
GeneID	`131023857`
locus_tag	`-`
NCBI Name	`LOC131023857`
原始查询	`SmilChr04G003061`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	alpha/beta-Hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:833818]; symbol=AT5G38360; hit=AT5G38360; species=arabidopsis; confidence=high
产物	alpha/beta-Hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:833818]; symbol=AT5G38360; hit=AT5G38360; species=arabidopsis; confidence=high
Arabidopsis	`AT5G38360` (AT5G38360) alpha/beta-Hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:833818] identity=67.7; qcov=0.868; evalue=5.46e-128; confidence=high
Rice	`Os04g0381400` - identity=57.5; qcov=0.31; evalue=1.37e-30; confidence=low
GO	-
KEGG	-
Pfam	PF00561 (Abhydrolase_1); PF12146 (Hydrolase_4); PF12697 (Abhydrolase_6)
InterPro	-
eggNOG	-
NR	GeneID:131023857

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057809458.1`
2	Chloroplast stroma	叶绿体基质	1.00000	`XP_057809460.1`
3	Chloroplast membrane	叶绿体膜	0.20000	`XP_057809458.1`
4	Nucleus	细胞核	0.00000	`XP_057809460.1`
5	Chromosome	染色体	0.00000	`XP_057809460.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:47178362`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A2
`Chr4:47178401`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A7,B35,C11,C23,C69
`Chr4:47178404`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B100,B104,B50,C63
`Chr4:47178627`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B121,C29,C56
`Chr4:47179970`	`G`	`A`	EMS_canonical_SNV	stop_gained	175	A1,A10,A13,A14,A15,A18,A19,A20,A21,A22,A24,A25,A3,A4,A6,A7,B1,B10,B100,B102,B103,B104,B105,B106,B107,B108,B109,B110,B113,B114,B115,B117,B118,B119,B120,B122,B125,B129,B13,B133,B135,B136,B137,B139,B14,B140,B15,B16,B18,B19,B2,B21,B22,B23,B24,B25,B27,B28,B29,B3,B31,B32,B36,B39,B4,B41,B43,B44,B45,B47,B51,B52,B53,B55,B56,B57,B59,B6,B61,B62,B63,B64,B65,B69,B70,B72,B73,B75,B77,B78,B79,B8,B80,B81,B83,B84,B88,B89,B9,B90,B92,B93,B96,B97,B98,B99,C1,C13,C14,C15,C18,C19,C2,C20,C22,C23,C24,C25,C26,C27,C28,C29,C3,C30,C31,C32,C33,C34,C35,C36,C39,C4,C40,C42,C43,C44,C45,C5,C50,C51,C52,C53,C54,C55,C57,C58,C59,C6,C60,C61,C63,C64,C67,C7,C70,C71,C72,C74,C75,C78,C79,C8,C80,C81,C82,C83,C84,C85,D10,D2,D3,D4,D5,D6,D7
`Chr4:47180242`	`GA`	`G`	1bp_deletion	frameshift_variant	4	B16,B40,C44,C52
`Chr4:47180242`	`GA`	`G`	1bp_deletion	CDS_variant	4	B16,B40,C44,C52
`Chr4:47181057`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C23

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057809458.1

341 aa

170

341

Abhydrolase_1

Hydrolase_4

Abhydrolase_6

PF00561 Abhydrolase_1 72-161 aa PF12146 Hydrolase_4 74-318 aa PF12697 Abhydrolase_6 74-319 aa

XP_057809459.1

339 aa

170

339

Abhydrolase_1

Hydrolase_4

Abhydrolase_6

PF00561 Abhydrolase_1 72-164 aa PF12146 Hydrolase_4 74-316 aa PF12697 Abhydrolase_6 74-317 aa

XP_057809460.1

305 aa

152

305

Abhydrolase_1

Hydrolase_4

Abhydrolase_6

PF00561 Abhydrolase_1 72-161 aa PF12146 Hydrolase_4 74-161 aa PF12697 Abhydrolase_6 74-297 aa

XP_057809462.1

303 aa

152

303

Abhydrolase_1

Hydrolase_4

Abhydrolase_6

PF00561 Abhydrolase_1 72-164 aa PF12146 Hydrolase_4 74-168 aa PF12697 Abhydrolase_6 74-295 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057809458.1`	Pfam	`PF00561`	Abhydrolase_1	Domain	72	161	1.3e-15	58.5	alpha/beta hydrolase fold
`XP_057809458.1`	Pfam	`PF12146`	Hydrolase_4	Domain	74	318	6.8e-10	39.4	Serine aminopeptidase, S33
`XP_057809458.1`	Pfam	`PF12697`	Abhydrolase_6	Domain	74	319	6.1e-22	80.0	Alpha/beta hydrolase family
`XP_057809459.1`	Pfam	`PF00561`	Abhydrolase_1	Domain	72	164	8.2e-16	59.1	alpha/beta hydrolase fold
`XP_057809459.1`	Pfam	`PF12146`	Hydrolase_4	Domain	74	316	3e-10	40.5	Serine aminopeptidase, S33
`XP_057809459.1`	Pfam	`PF12697`	Abhydrolase_6	Domain	74	317	4.6e-22	80.4	Alpha/beta hydrolase family
`XP_057809460.1`	Pfam	`PF00561`	Abhydrolase_1	Domain	72	161	1.6e-14	54.9	alpha/beta hydrolase fold
`XP_057809460.1`	Pfam	`PF12146`	Hydrolase_4	Domain	74	161	3.7e-08	33.7	Serine aminopeptidase, S33
`XP_057809460.1`	Pfam	`PF12697`	Abhydrolase_6	Domain	74	297	6.7e-20	73.4	Alpha/beta hydrolase family
`XP_057809462.1`	Pfam	`PF00561`	Abhydrolase_1	Domain	72	164	1e-14	55.5	alpha/beta hydrolase fold
`XP_057809462.1`	Pfam	`PF12146`	Hydrolase_4	Domain	74	168	1.4e-08	35.1	Serine aminopeptidase, S33
`XP_057809462.1`	Pfam	`PF12697`	Abhydrolase_6	Domain	74	295	5e-20	73.8	Alpha/beta hydrolase family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057953479.1
ACCCTCCAAGTCTCCGTAATGGCATAAAGTTGAAAAACAGAGAATTGCAACTTATCCTTGTTGCTGGAACTATCAACAATGGCGGCCATTGGCACCACAATTCTCACAAACAATCTTCACTGCGGAGTGGCCGTGAAGCCCCGGGCCGCTCACGCTCTCACCATCAACAACTACAAAATGCCGGTACCTTACGAACTCAAGCAAGGACAGTCCCGCCAATTTCACAAGCTCCCTTCCGGTTCCAGCATGGAGATCATCTT...

XM_057953476.1
ACCCTCCAAGTCTCCGTAATGGCATAAAGTTGAAAAACAGAGAATTGCAACTTATCCTTGTTGCTGGAACTATCAACAATGGCGGCCATTGGCACCACAATTCTCACAAACAATCTTCACTGCGGAGTGGCCGTGAAGCCCCGGGCCGCTCACGCTCTCACCATCAACAACTACAAAATGCCGGTACCTTACGAACTCAAGCAAGGACAGTCCCGCCAATTTCACAAGCTCCCTTCCGGTTCCAGCATGGAGATCATCTT...

CDS

4 records

下载 CDS FASTA

LOC131023857
ATGGCGGCCATTGGCACCACAATTCTCACAAACAATCTTCACTGCGGAGTGGCCGTGAAGCCCCGGGCCGCTCACGCTCTCACCATCAACAACTACAAAATGCCGGTACCTTACGAACTCAAGCAAGGACAGTCCCGCCAATTTCACAAGCTCCCTTCCGGTTCCAGCATGGAGATCATCTTCCAAAAAGGCCATCACAAAATTGATGAGAAGCCGCCGTTAGTATTCGTGCACGGGAGTTTTCACGCTGCGTGGTGCTG...

Protein

4 records

下载 Protein FASTA

XP_057809458.1
MAAIGTTILTNNLHCGVAVKPRAAHALTINNYKMPVPYELKQGQSRQFHKLPSGSSMEIIFQKGHHKIDEKPPLVFVHGSFHAAWCWAEHWLPFFSRHGFDCYALSLLAQGESDSPDGAVAGSLQSHAADVADFIHKEIQLPPILLGHSFGGLIVQYYIANVGNEKLQVSEMENTHPNLAGAVLVCSVPPSGNSGLVWRYLFSKPIAAFKVTRSLAAKAFQTSLPLCKETFFSASMEDHLVLRYQKLMTESSRKPLFDLR...

XP_057809459.1
MAAIGTTILTNNLHCGVAVKPRAAHALTINNYKMPVPYELKQGQSRQFHKLPSGSSMEIIFQKGHHKIDEKPPLVFVHGSFHAAWCWAEHWLPFFSRHGFDCYALSLLAQGESDSPDGAVAGSLQSHAADVADFIHKEIQLPPILLGHSFGGLIVQYYIANVGNEKLQEMENTHPNLAGAVLVCSVPPSGNSGLVWRYLFSKPIAAFKVTRSLAAKAFQTSLPLCKETFFSASMEDHLVLRYQKLMTESSRKPLFDLRKL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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