Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G003073`

染色体: Chr04 坐标: 47288630-47292143 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G003073`
名称	SmilChr04G003073
描述	uncharacterized SmilChr04G003073
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	47288630 - 47292143 / `-`

ID 对照

NCBI Gene ID	`LOC131023870`
GeneID	`131023870`
locus_tag	`-`
NCBI Name	`LOC131023870`
原始查询	`SmilChr04G003073`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	hit=Os12g0599900; species=rice; confidence=medium
产物	hit=Os12g0599900; species=rice; confidence=medium
Arabidopsis	`AT3G04710` (TPR10) ankyrin repeat family protein [Source:NCBI gene (formerly Entrezgene);Acc:819629] identity=37.2; qcov=0.964; evalue=7.57e-80; confidence=medium
Rice	`Os12g0599900` - identity=37.9; qcov=0.94; evalue=7.53e-81; confidence=medium
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF00023 (Ank); PF12796 (Ank_2); PF13606 (Ank_3); PF13637 (Ank_4); PF13857 (Ank_5)
InterPro	-
eggNOG	-
NR	GeneID:131023870

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	0.80000	`XP_057809484.1`
2	Cytosol	细胞质基质	0.80000	`XP_057809484.1`
3	Nucleus	细胞核	0.40000	`XP_057809484.1`
4	Chromosome	染色体	0.00000	`XP_057809484.1`
5	Centromere	着丝粒	0.00000	`XP_057809484.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:47288832`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C68
`Chr4:47289075`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B2
`Chr4:47289227`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C23
`Chr4:47289290`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr4:47289983`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B109
`Chr4:47289993`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D1
`Chr4:47290174`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B98,C5
`Chr4:47290177`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C2
`Chr4:47290236`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A7,B81,B82,B84,C59
`Chr4:47290248`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A11,C65,C9
`Chr4:47290724`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A19,B121,B64,C20,C87
`Chr4:47291477`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057809484.1

452 aa

226

452

Ank_3

Ank

Ank_4

Ank_2

Ank

Ank_2

Ank_4

Ank_5

Ank

Ank_3

Ank_4

Ank_2

Ank_3

Ank

Ank_4

PF13606 Ank_3 59-87 aa PF00023 Ank 59-88 aa PF13637 Ank_4 63-113 aa PF12796 Ank_2 63-154 aa PF00023 Ank 94-120 aa PF12796 Ank_2 97-186 aa PF13637 Ank_4 99-146 aa PF13857 Ank_5 112-165 aa PF00023 Ank 126-154 aa PF13606 Ank_3 126-154 aa PF13637 Ank_4 136-178 aa PF12796 Ank_2 159-219 aa PF13606 Ank_3 160-185 aa PF00023 Ank 160-188 aa PF13637 Ank_4 162-211 aa

XP_057809485.1

449 aa

224

449

Ank_3

Ank

Ank_4

Ank_2

Ank

Ank_2

Ank_4

Ank_5

Ank

Ank_3

Ank_4

Ank_2

Ank_3

Ank

Ank_4

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057809484.1`	Pfam	`PF13606`	Ank_3	Repeat	59	87	6.1e-31	103.3	Ankyrin repeat
`XP_057809484.1`	Pfam	`PF00023`	Ank	Repeat	59	88	3.2e-39	131.4	Ankyrin repeat
`XP_057809484.1`	Pfam	`PF13637`	Ank_4	Repeat	63	113	1.5e-36	124.3	Ankyrin repeats (many copies)
`XP_057809484.1`	Pfam	`PF12796`	Ank_2	Repeat	63	154	1.1e-60	202.9	Ankyrin repeats (3 copies)
`XP_057809484.1`	Pfam	`PF00023`	Ank	Repeat	94	120	3.2e-39	131.4	Ankyrin repeat
`XP_057809484.1`	Pfam	`PF12796`	Ank_2	Repeat	97	186	1.1e-60	202.9	Ankyrin repeats (3 copies)
`XP_057809484.1`	Pfam	`PF13637`	Ank_4	Repeat	99	146	1.5e-36	124.3	Ankyrin repeats (many copies)
`XP_057809484.1`	Pfam	`PF13857`	Ank_5	Repeat	112	165	7.1e-26	90.7	Ankyrin repeats (many copies)
`XP_057809484.1`	Pfam	`PF00023`	Ank	Repeat	126	154	3.2e-39	131.4	Ankyrin repeat
`XP_057809484.1`	Pfam	`PF13606`	Ank_3	Repeat	126	154	6.1e-31	103.3	Ankyrin repeat
`XP_057809484.1`	Pfam	`PF13637`	Ank_4	Repeat	136	178	1.5e-36	124.3	Ankyrin repeats (many copies)
`XP_057809484.1`	Pfam	`PF12796`	Ank_2	Repeat	159	219	1.1e-60	202.9	Ankyrin repeats (3 copies)
`XP_057809484.1`	Pfam	`PF13606`	Ank_3	Repeat	160	185	6.1e-31	103.3	Ankyrin repeat
`XP_057809484.1`	Pfam	`PF00023`	Ank	Repeat	160	188	3.2e-39	131.4	Ankyrin repeat
`XP_057809484.1`	Pfam	`PF13637`	Ank_4	Repeat	162	211	1.5e-36	124.3	Ankyrin repeats (many copies)
`XP_057809485.1`	Pfam	`PF13606`	Ank_3	Repeat	59	87	5.8e-31	103.4	Ankyrin repeat
`XP_057809485.1`	Pfam	`PF00023`	Ank	Repeat	59	88	3e-39	131.5	Ankyrin repeat
`XP_057809485.1`	Pfam	`PF13637`	Ank_4	Repeat	63	113	1.3e-36	124.5	Ankyrin repeats (many copies)
`XP_057809485.1`	Pfam	`PF12796`	Ank_2	Repeat	63	154	8.8e-61	203.2	Ankyrin repeats (3 copies)
`XP_057809485.1`	Pfam	`PF00023`	Ank	Repeat	94	120	3e-39	131.5	Ankyrin repeat
`XP_057809485.1`	Pfam	`PF12796`	Ank_2	Repeat	97	186	8.8e-61	203.2	Ankyrin repeats (3 copies)
`XP_057809485.1`	Pfam	`PF13637`	Ank_4	Repeat	99	146	1.3e-36	124.5	Ankyrin repeats (many copies)
`XP_057809485.1`	Pfam	`PF13857`	Ank_5	Repeat	112	165	6.1e-26	90.9	Ankyrin repeats (many copies)
`XP_057809485.1`	Pfam	`PF00023`	Ank	Repeat	126	154	3e-39	131.5	Ankyrin repeat
`XP_057809485.1`	Pfam	`PF13606`	Ank_3	Repeat	126	154	5.8e-31	103.4	Ankyrin repeat
`XP_057809485.1`	Pfam	`PF13637`	Ank_4	Repeat	136	178	1.3e-36	124.5	Ankyrin repeats (many copies)
`XP_057809485.1`	Pfam	`PF12796`	Ank_2	Repeat	159	219	8.8e-61	203.2	Ankyrin repeats (3 copies)
`XP_057809485.1`	Pfam	`PF13606`	Ank_3	Repeat	160	185	5.8e-31	103.4	Ankyrin repeat
`XP_057809485.1`	Pfam	`PF00023`	Ank	Repeat	160	188	3e-39	131.5	Ankyrin repeat
`XP_057809485.1`	Pfam	`PF13637`	Ank_4	Repeat	162	211	1.3e-36	124.5	Ankyrin repeats (many copies)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057953501.1
TTGCTTTATTACAGAAGACACGTGGCCCAATCCCCCTCTGTTTCTTCGCGCCTTTTCTTCTTCCTCACAGCTGAGTATTTGTTTTGTTTTTTCTGGGTTTCCCCACACAACTCCTTCCAATCTTTCTCTTGGGGAGTTAAACAGCCGAAAGCTTCTGCTATAAATCATAAAAGAAGAAAGAAGCTTCTTTCACATTTTCTTTTTATGACGGGAGTTTCTCTTACATTTTCAAACGCCATGAATTTTGCTTCTGAAACTGG...

XM_057953502.1
GCCTTTTCTTCTTCCTCACAGCTGAGTATTTGTTTTGTTTTTTCTGGGTTTCCCCACACAACTCCTTCCAATCTTTCTCTTGGGGAGTTAAACAGCCGAAAGCTTCTGCTATAAATCATAAAAGAAGAAAGAAGCTTCTTTCACATTTTCTTTTTATGACGGGAGTTTCTCTTACATTTTCAAACGCCATGAATTTTGCTTCTGAAACTGGTAGTGTGATTCTTGAGGCTGGTGCTACTGGAGATCTTGCAAAACTTAAG...

CDS

2 records

下载 CDS FASTA

LOC131023870
ATGACGGGAGTTTCTCTTACATTTTCAAACGCCATGAATTTTGCTTCTGAAACTGGTAGTGTGATTCTTGAGGCTGGTGCTACTGGAGATCTTGCAAAACTTAAGGAGATCAAGAAGAAGGTTGATGATGTCGATTTCAGGAGGATATGTGATGTAATCAATGACTTGTGCACTGGCCGGAGAGTCTTGCATCACGCGGCTGAAATGGGGCATTTTCAAGTTTGCAAATTCTTGATTGAGAACGCCGGAGTCTATATTGA...

Protein

2 records

下载 Protein FASTA

XP_057809484.1
MTGVSLTFSNAMNFASETGSVILEAGATGDLAKLKEIKKKVDDVDFRRICDVINDLCTGRRVLHHAAEMGHFQVCKFLIENAGVYIDVLTDKEDSPLMLAAKAEKVNIVKYLISKGAEVQMSSDKGFTALHYAVQKGNLELMELLLKSGADIDAESVDGTPLQYAASCGSVEAVKFLLKNNAEPDAITSFFGSPLISAIKSRSFECMELLLKGKADPNQYLYGLNTLSHAAKEGDTRYLNRLIEAGADPSLVNSSNHCFL...

XP_057809485.1
MTGVSLTFSNAMNFASETGSVILEAGATGDLAKLKEIKKKVDDVDFRRICDVINDLCTGRRVLHHAAEMGHFQVCKFLIENAGVYIDVLTDKEDSPLMLAAKAEKVNIVKYLISKGAEVQMSSDKGFTALHYAVQKGNLELMELLLKSGADIDAESVDGTPLQYAASCGSVEAVKFLLKNNAEPDAITSFFGSPLISAIKSRSFECMELLLKGKADPNQYLYGLNTLSHAAKEGDTRYLNRLIEAGADPSLVNSSNHCFL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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