当前解析结果
SmilChr04G003077| 统一新 Gene ID | SmilChr04G003077 |
|---|---|
| 名称 | SmilChr04G003077 |
| 描述 | uncharacterized SmilChr04G003077 |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 47374473 - 47377356 / + |
| NCBI Gene ID | LOC131023527 |
|---|---|
| GeneID | 131023527 |
| locus_tag | - |
| NCBI Name | LOC131023527 |
| 原始查询 | SmilChr04G003077 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | MuDR family transposase [Source:NCBI gene (formerly Entrezgene);Acc:3768859]; symbol=MUG7; hit=AT3G05850; species=arabidopsis; confidence=weak |
| 产物 | MuDR family transposase [Source:NCBI gene (formerly Entrezgene);Acc:3768859]; symbol=MUG7; hit=AT3G05850; species=arabidopsis; confidence=weak |
| Arabidopsis | AT3G05850 (MUG7)MuDR family transposase [Source:NCBI gene (formerly Entrezgene);Acc:3768859] identity=24.2; qcov=0.91; evalue=1.11e-59; confidence=weak |
| Rice | Os12g0597300- identity=26.6; qcov=0.635; evalue=2.11e-54; confidence=low |
| GO | GO:0003676 (nucleic acid binding); GO:0008270 (zinc ion binding) |
| KEGG | - |
| Pfam | PF00872 (Transposase_mut); PF04434 (SWIM); PF10551 (MULE) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131023527 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057809055.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057809055.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057809055.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057809055.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057809055.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:47374538 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C76 |
Chr4:47374640 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B45,B46 |
Chr4:47374671 |
C |
T |
EMS_canonical_SNV | stop_gained | 3 | B130,B64,B84 |
Chr4:47374671 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B130,B64,B84 |
Chr4:47374675 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B25,C19 |
Chr4:47374724 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B3,C13,C4 |
Chr4:47374743 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B65,B98 |
Chr4:47374763 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C48 |
Chr4:47374766 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C48 |
Chr4:47374779 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B103 |
Chr4:47374805 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B38,B56,D5 |
Chr4:47374849 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B129,B74 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057809055.1PF00872
Transposase_mut 427-526 aa
PF10551
MULE 428-522 aa
PF04434
SWIM 671-701 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057809055.1 |
Pfam | PF00872 |
Transposase_mut | Family | 427 | 526 | 1e-10 | 41.8 | Transposase, Mutator family |
XP_057809055.1 |
Pfam | PF10551 |
MULE | Domain | 428 | 522 | 1.1e-20 | 74.5 | MULE transposase domain |
XP_057809055.1 |
Pfam | PF04434 |
SWIM | Domain | 671 | 701 | 3.8e-07 | 30.2 | SWIM zinc finger |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。