Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G003104`

染色体: Chr04 坐标: 47611680-47617296 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G003104`
名称	SmilChr04G003104
描述	ATP-dependent DNA helicase DDM1
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	47611680 - 47617296 / `-`

ID 对照

NCBI Gene ID	`LOC131023898`
GeneID	`131023898`
locus_tag	`-`
NCBI Name	`LOC131023898`
原始查询	`SmilChr04G003104`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	ATP-dependent DNA helicase DDM1
产物	ATP-dependent DNA helicase DDM1
Arabidopsis	`AT5G66750` (CHR1) chromatin remodeling 1 [Source:NCBI gene (formerly Entrezgene);Acc:836808] identity=69; qcov=1.01; evalue=0; confidence=high
Rice	`Os09g0442700` (OsDDM1a) - identity=66.4; qcov=0.996; evalue=0; confidence=high
GO	GO:0003677 (DNA binding); GO:0005524 (ATP binding); GO:0005634 (nucleus); GO:0044030 (GO:0044030); GO:0140658 (ATP-dependent chromatin remodeler activity)
KEGG	-
Pfam	PF00176 (SNF2-rel_dom); PF00270 (DEAD); PF00271 (Helicase_C); PF04851 (ResIII)
InterPro	-
eggNOG	-
NR	GeneID:131023898

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057809525.1`
2	Nucleoplasm	核质	0.40000	`XP_057809525.1`
3	Chromosome	染色体	0.00000	`XP_057809525.1`
4	Centromere	着丝粒	0.00000	`XP_057809525.1`
5	Chromatin	染色质	0.00000	`XP_057809525.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:47612376`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C15
`Chr4:47612526`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C79
`Chr4:47612527`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B33,B41
`Chr4:47613859`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B9,C54
`Chr4:47615321`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A7,C56

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057809525.1

747 aa

374

747

ResIII

SNF2-rel_dom

DEAD

Helicase_C

PF04851 ResIII 178-341 aa PF00176 SNF2-rel_dom 182-479 aa PF00270 DEAD 194-345 aa PF00271 Helicase_C 502-615 aa

XP_057809526.1

747 aa

374

747

ResIII

SNF2-rel_dom

DEAD

Helicase_C

PF04851 ResIII 178-341 aa PF00176 SNF2-rel_dom 182-479 aa PF00270 DEAD 194-345 aa PF00271 Helicase_C 502-615 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057809525.1`	Pfam	`PF04851`	ResIII	Family	178	341	5.7e-10	40.1	Type III restriction enzyme, res subunit
`XP_057809525.1`	Pfam	`PF00176`	SNF2-rel_dom	Domain	182	479	2.2e-85	287.0	SNF2-related domain
`XP_057809525.1`	Pfam	`PF00270`	DEAD	Domain	194	345	7.6e-07	29.7	DEAD/DEAH box helicase
`XP_057809525.1`	Pfam	`PF00271`	Helicase_C	Domain	502	615	6.7e-28	97.8	Helicase conserved C-terminal domain
`XP_057809526.1`	Pfam	`PF04851`	ResIII	Family	178	341	5.7e-10	40.1	Type III restriction enzyme, res subunit
`XP_057809526.1`	Pfam	`PF00176`	SNF2-rel_dom	Domain	182	479	2.2e-85	287.0	SNF2-related domain
`XP_057809526.1`	Pfam	`PF00270`	DEAD	Domain	194	345	7.6e-07	29.7	DEAD/DEAH box helicase
`XP_057809526.1`	Pfam	`PF00271`	Helicase_C	Domain	502	615	6.7e-28	97.8	Helicase conserved C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057953542.1
ATTTCCCGCCCATCGCCTCCTCCTCTGCAGACATAATCGCCATTACCTTGAAATAAATAACTGTGCACACCTTTTTTTGAATCTAAATTCTCTGTTTCTTTTTGCTTCTCTCCATTCTTTCTGGTCTCTTCCCTCTTTCAGAGAGATAGAGAGAGATAGAAGAGAGAGAGACAGATAGAAGATAGCTTACAAATTGACTTGCAGTTCATTTTCGTATATTGAAGAGAAATGACGGCCGAGCACGAAGTGAAGAGCGAGCC...

XM_057953543.1
AGACATAATCGCCATTACCTTGAAATAAATAACTGTGCACACCTTTTTTTGAATCTAAATTCTCTGTTTCTTTTTGCTTCTCTCCATTCTTTCTGGTCTCTTCCCTCTTTCAGAGAGATAGAGAGAGATAGAAGAGAGAGAGACAGATAGAAGATAGCTTACAAATTGACTTGCAGTTCATTTTCGTATATTGAGGTAGAGAGAAATGACGGCCGAGCACGAAGTGAAGAGCGAGCCTGTGGCAGATTCTCCGACCTCTG...

CDS

2 records

下载 CDS FASTA

LOC131023898
ATGACGGCCGAGCACGAAGTGAAGAGCGAGCCTGTGGCAGATTCTCCGACCTCTGTTCTTGAAGATGAGGATGTCAAGGAGAATGCAAGTGTTGATGTTGAGGTTGACGATATTAAGGAAGGAGTTCATTCACTTGTTTCAATAACCATGGAGGAGGAGGAAGAAAAGCTGCAGGAAGAGCGGCTGGAAGATGAGAAGCCTATTGAAGGACCTCACTTGAATGACACCCAGTTCACAAAATTGGATGAGCTTTTAACTCA...

Protein

2 records

下载 Protein FASTA

XP_057809525.1
MTAEHEVKSEPVADSPTSVLEDEDVKENASVDVEVDDIKEGVHSLVSITMEEEEEKLQEERLEDEKPIEGPHLNDTQFTKLDELLTQTQLYSEFLLEKMDDITKNGLEDDGKIVKGMRGRGSKRKATANYNNRKAKRAVAAMLTRGKDGSSAEDSTLTDVEKAEKEQEELVPLLTGGKLKTYQLKGVKWMISLWQNGLNGILADQMGLGKTIQSIAFLAHLKGNGLHGPYLVIAPLSTLSNWMNEIERFVPSVAAIIYHG...

XP_057809526.1
MTAEHEVKSEPVADSPTSVLEDEDVKENASVDVEVDDIKEGVHSLVSITMEEEEEKLQEERLEDEKPIEGPHLNDTQFTKLDELLTQTQLYSEFLLEKMDDITKNGLEDDGKIVKGMRGRGSKRKATANYNNRKAKRAVAAMLTRGKDGSSAEDSTLTDVEKAEKEQEELVPLLTGGKLKTYQLKGVKWMISLWQNGLNGILADQMGLGKTIQSIAFLAHLKGNGLHGPYLVIAPLSTLSNWMNEIERFVPSVAAIIYHG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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