当前解析结果
SmilChr04G003105| 统一新 Gene ID | SmilChr04G003105 |
|---|---|
| 名称 | SmilChr04G003105 |
| 描述 | proline-rich receptor-like protein kinase PERK5 |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 47623179 - 47626058 / - |
| NCBI Gene ID | LOC131023899 |
|---|---|
| GeneID | 131023899 |
| locus_tag | - |
| NCBI Name | LOC131023899 |
| 原始查询 | SmilChr04G003105 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | proline-rich receptor-like protein kinase PERK5 |
| 产物 | proline-rich receptor-like protein kinase PERK5 |
| Arabidopsis | AT3G24550 (PERK1)proline extensin-like receptor kinase 1 [Source:NCBI gene (formerly Entrezgene);Acc:822051] identity=69.8; qcov=0.52; evalue=0; confidence=medium |
| Rice | Os05g0218400 (OsRLCK181)- identity=71.1; qcov=0.519; evalue=1.42e-180; confidence=medium |
| GO | GO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131023899 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057809527.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057809527.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057809527.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057809527.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057809527.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:47623678 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B13 |
Chr4:47624582 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C6 |
Chr4:47625187 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A7,C84 |
Chr4:47625214 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A7,C84 |
Chr4:47625250 |
T |
TG |
1bp_insertion | frameshift_variant | 138 | A1,A10,A11,A13,A14,A15,A16,A19,A2,A21,A22,A24,A3,A5,A7,A8,B100,B103,B104,B106,B107,B109,B111,B118,B121,B122,B123,B126,B129,B13,B131,B132,B133,B134,B135,B139,B14,B15,B17,B18,B22,B23,B24,B25,B28,B29,B3,B30,B32,B35,B37,B38,B4,B40,B42,B44,B50,B51,B54,B55,B56,B57,B59,B60,B63,B65,B67,B68,B70,B72,B74,B75,B79,B80,B81,B85,B89,B90,B91,B93,B97,B99,C1,C12,C13,C16,C17,C18,C23,C24,C25,C27,C30,C31,C32,C33,C35,C36,C39,C40,C41,C43,C46,C47,C49,C5,C50,C51,C53,C55,C58,C59,C60,C61,C62,C63,C65,C67,C68,C69,C71,C72,C73,C74,C76,C78,C80,C83,C84,C86,C87,C9,D10,D11,D2,D3,D7,D8 |
Chr4:47625251 |
G |
A |
EMS_canonical_SNV | stop_gained | 2 | A7,C77 |
Chr4:47625251 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A7,C77 |
Chr4:47625253 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C77 |
Chr4:47625274 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C39 |
Chr4:47625275 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A7,C77,C84 |
Chr4:47625312 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C82 |
Chr4:47625314 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A13,B25,C13 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057809527.1PF00069
Pkinase 323-527 aa
PF07714
PK_Tyr_Ser-Thr 325-594 aa
XP_057809528.1PF00069
Pkinase 323-527 aa
PF07714
PK_Tyr_Ser-Thr 325-594 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057809527.1 |
Pfam | PF00069 |
Pkinase | Domain | 323 | 527 | 3.6e-42 | 145.3 | Protein kinase domain |
XP_057809527.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 325 | 594 | 9e-45 | 153.7 | Protein tyrosine and serine/threonine kinase |
XP_057809528.1 |
Pfam | PF00069 |
Pkinase | Domain | 323 | 527 | 3.6e-42 | 145.3 | Protein kinase domain |
XP_057809528.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 325 | 594 | 9e-45 | 153.7 | Protein tyrosine and serine/threonine kinase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。