Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G003109`

染色体: Chr04 坐标: 47644162-47646786 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G003109`
名称	SmilChr04G003109
描述	uncharacterized SmilChr04G003109
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	47644162 - 47646786 / `+`

ID 对照

NCBI Gene ID	`LOC131023904`
GeneID	`131023904`
locus_tag	`-`
NCBI Name	`LOC131023904`
原始查询	`SmilChr04G003109`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	RING/U-box superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:829539]; symbol=AT4G33940; hit=AT4G33940; species=arabidopsis; confidence=low
产物	RING/U-box superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:829539]; symbol=AT4G33940; hit=AT4G33940; species=arabidopsis; confidence=low
Arabidopsis	`AT4G33940` (AT4G33940) RING/U-box superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:829539] identity=29.2; qcov=0.689; evalue=1.09e-20; confidence=low
Rice	`Os03g0839000` (OSJNBa0042I09.10) - identity=26; qcov=0.718; evalue=4.53e-10; confidence=low
GO	GO:0061630 (ubiquitin protein ligase activity)
KEGG	-
Pfam	PF00097 (zf-C3HC4); PF13445 (zf-RING_UBOX)
InterPro	-
eggNOG	-
NR	GeneID:131023904

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Endoplasmic reticulum	内质网	1.00000	`XP_057809532.1`
2	Endoplasmic reticulum membrane	内质网膜	1.00000	`XP_057809532.1`
3	Nucleus	细胞核	0.00000	`XP_057809532.1`
4	Chromosome	染色体	0.00000	`XP_057809532.1`
5	Centromere	着丝粒	0.00000	`XP_057809532.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:47644888`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B130,B63,C53
`Chr4:47645870`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B31,C2,C32,C68
`Chr4:47645888`	`G`	`GA`	1bp_insertion	frameshift_variant	5	A2,A22,B103,C67,D10
`Chr4:47645888`	`G`	`GA`	1bp_insertion	CDS_variant	5	A2,A22,B103,C67,D10
`Chr4:47645926`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C85
`Chr4:47645962`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B137,B24,B48,B60
`Chr4:47645984`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B56,B96
`Chr4:47646052`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B46
`Chr4:47646070`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B137,B24,B48,B60
`Chr4:47646140`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr4:47646242`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D6
`Chr4:47646244`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B137,B24,B48,B60

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057809532.1

217 aa

108

217

zf-RING_UBOX

zf-C3HC4

PF13445 zf-RING_UBOX 44-84 aa PF00097 zf-C3HC4 44-86 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057809532.1`	Pfam	`PF13445`	zf-RING_UBOX	Domain	44	84	1.2e-10	41.9	RING-type zinc-finger
`XP_057809532.1`	Pfam	`PF00097`	zf-C3HC4	Domain	44	86	9e-08	32.6	Zinc finger, C3HC4 type (RING finger)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057953550.1
TCCTCTCTTTAACGCAAAAATACAAAAACAAAAAAAGAAGAAGCTTCCCTCTTACAGTAAAGCTTCATCGACACAGAGTTCTCCAAAAATTAGAGCTTATGCTATTTATATGCTAGTACTAATATTTTTCCTATTATGTTCATTGGACTAGCTTCCCTCGTAAAAAAGAGTAACTTACGATTATCCATACAATTTCTGCTCCTTCTATAAATACTTGATAATCTTCTGTTTTTATATATAGAATAAATTTAAAGCTGATG...

XM_057953549.1
AGAAGCTTCCCTCTTACAGTAAAGCTTCATCGACACAGAGTTCTCCAAAAATTAGAGCTTATGCTATTTATATGCTAGTACTAATATTTTTCCTATTATGTTCATTGGACTAGCTTCCCTCGTAAAAAAGAGTAACTTACGATTATCCATACAATTTCTGCTCCTTCTATAAATACTTGATAATCTTCTGTTTTTATATATAGAATAAATTTAAAGCTGATGTATAAAATAATGGAAGTTGAAGTTTTAATGGATCAGGC...

CDS

2 records

下载 CDS FASTA

LOC131023904
ATGTTCATGGAGGAGTTGGTTATTAGGGAAAACGAGGAGAGGGAGAGGAAAATGGAGATGGTTGGGTCTGAAAATGGGGAAAGAGTAGGGGGAGGATATTGTAGGGATAGCCCACCTGAAGATGACTGCTGCCCCATTTGCTTTGATGATTTCCACTTTCCATCCAGAACTAGCTGTGGCCACTGGTTTTGCTCAAGCTGCATTCTGGAGCTATGGAGATACCGGGCAAAATCCAAACAATGCAAATGCCCTATATGTGG...

LOC131023904
ATGACTGCTGCCCCATTTGCTTTGATGATTTCCACTTTCCATCCAGAACTAGCTGTGGCCACTGGTTTTGCTCTTGAATGCAAACCATTGTATTGGTTGAAAGAATATGTAATGGTGGTCTCTCTCTCCCACCATTGGCTCTCTTATGCACTTGGATGTGATTTAACAGCAAGCTGCATTCTGGAGCTATGGAGATACCGGGCAAAATCCAAACAATGCAAATGCCCTATATGTGGATGTTTAATACATAATCTGGTTCT...

Protein

2 records

下载 Protein FASTA

XP_057809532.1
MFMEELVIRENEERERKMEMVGSENGERVGGGYCRDSPPEDDCCPICFDDFHFPSRTSCGHWFCSSCILELWRYRAKSKQCKCPICGCLIHNLVLQSSIVIEPGEEVGKILRDIQLYNTMNLGGLSGLLMKAAALPVVIRRGVWENLNITMLEYICNSMHRIGLLLGVMYEVFELQFFPSGGLGIAVWFDMCIYGLVVFLLWDVIWQRWMIIITRLL

XP_057809533.1
MTAAPFALMISTFHPELAVATGFALECKPLYWLKEYVMVVSLSHHWLSYALGCDLTASCILELWRYRAKSKQCKCPICGCLIHNLVLQSSIVIEPGEEVGKILRDIQLYNTMNLGGLSGLLMKAAALPVVIRRGVWENLNITMLEYICNSMHRIGLLLGVMYEVFELQFFPSGGLGIAVWFDMCIYGLVVFLLWDVIWQRWMIIITRLL

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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