Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G003149`

染色体: Chr04 坐标: 48114356-48119283 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G003149`
名称	SmilChr04G003149
描述	caffeoylshikimate esterase-like
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	48114356 - 48119283 / `+`

ID 对照

NCBI Gene ID	`LOC131023944`
GeneID	`131023944`
locus_tag	`-`
NCBI Name	`LOC131023944`
原始查询	`SmilChr04G003149`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	caffeoylshikimate esterase-like
产物	caffeoylshikimate esterase-like
Arabidopsis	`AT5G16120` (AT5G16120) alpha/beta-Hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:831469] identity=67.6; qcov=0.962; evalue=3.01e-175; confidence=high
Rice	`Os10g0135600` (OsPOP20) - identity=65.9; qcov=0.991; evalue=4.82e-171; confidence=high
GO	GO:0016020 (membrane); GO:0016298 (lipase activity)
KEGG	smil00940 (Phenylpropanoid biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage))
Pfam	PF00561 (Abhydrolase_1); PF00756 (Esterase); PF12146 (Hydrolase_4); PF12697 (Abhydrolase_6)
InterPro	-
eggNOG	-
NR	GeneID:131023944

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	0.80000	`XP_057809590.1`
2	Endoplasmic reticulum	内质网	0.60000	`XP_057809590.1`
3	Lipid droplet	脂滴	0.60000	`XP_057809590.1`
4	Cytoplasm	细胞质	0.20000	`XP_057809590.1`
5	Nucleus	细胞核	0.00000	`XP_057809590.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:48114675`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	C2,C32,C68
`Chr4:48115859`	`GC`	`G`	1bp_deletion	frameshift_variant	1	B127
`Chr4:48115859`	`GC`	`G`	1bp_deletion	CDS_variant	1	B127
`Chr4:48117364`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B54
`Chr4:48117486`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	C2,C32,C68
`Chr4:48117812`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A2
`Chr4:48118917`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A7,B77,C11,C23,C69

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057809590.1

343 aa

172

343

Hydrolase_4

Abhydrolase_1

Abhydrolase_6

Esterase

PF12146 Hydrolase_4 80-322 aa PF00561 Abhydrolase_1 84-321 aa PF12697 Abhydrolase_6 87-325 aa PF00756 Esterase 159-199 aa

XP_057809591.1

343 aa

172

343

Hydrolase_4

Abhydrolase_1

Abhydrolase_6

Esterase

PF12146 Hydrolase_4 80-322 aa PF00561 Abhydrolase_1 84-321 aa PF12697 Abhydrolase_6 87-325 aa PF00756 Esterase 159-199 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057809590.1`	Pfam	`PF12146`	Hydrolase_4	Domain	80	322	1.2e-69	235.0	Serine aminopeptidase, S33
`XP_057809590.1`	Pfam	`PF00561`	Abhydrolase_1	Domain	84	321	3.1e-16	60.5	alpha/beta hydrolase fold
`XP_057809590.1`	Pfam	`PF12697`	Abhydrolase_6	Domain	87	325	5.2e-13	50.8	Alpha/beta hydrolase family
`XP_057809590.1`	Pfam	`PF00756`	Esterase	Domain	159	199	8.2e-05	23.2	Putative esterase
`XP_057809591.1`	Pfam	`PF12146`	Hydrolase_4	Domain	80	322	1.2e-69	235.0	Serine aminopeptidase, S33
`XP_057809591.1`	Pfam	`PF00561`	Abhydrolase_1	Domain	84	321	3.1e-16	60.5	alpha/beta hydrolase fold
`XP_057809591.1`	Pfam	`PF12697`	Abhydrolase_6	Domain	87	325	5.2e-13	50.8	Alpha/beta hydrolase family
`XP_057809591.1`	Pfam	`PF00756`	Esterase	Domain	159	199	8.2e-05	23.2	Putative esterase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057953608.1
TGCAAAGAAATGACACAATATAAAAGCAAAATAATAATACTCCATAGAAATTGCTCATAAATTCAGTTATCCCAATATTCCGCACGCAAGCTTTGAATCTTGGGGAAGCGCTCTTTCAATTGCATACGAAAACCAAACTGCCCTCAATCCATCAACTGAAAGGTCAAGCGATGGGGAGTCCTGTGAAGTTTGAGGGTATAAGCGAGGATTTGCAGAAGATTCTGGATGCTGAAATGGACCATGTGGGGCCCAGGAGGCGA...

XM_057953607.1
AAAAGCAAAATAATAATACTCCATAGAAATTGCTCATAAATTCAGTTATCCCAATATTCCGCACGCAAGCTTTGAATCTTGGGGAAGCGCTCTTTCAATTGCATACGAAAACCAAACTGCCCTCAATCCATCGTAACTGTCTTCCTTTCTTCCCTCATTTCTGAAAATTTATTGATTCTTAGTTGGCTGGTGTCTGTTTGAACTAGAACTGAAAGGTCAAGCGATGGGGAGTCCTGTGAAGTTTGAGGGTATAAGCGAGG...

CDS

2 records

下载 CDS FASTA

LOC131023944
ATGGGGAGTCCTGTGAAGTTTGAGGGTATAAGCGAGGATTTGCAGAAGATTCTGGATGCTGAAATGGACCATGTGGGGCCCAGGAGGCGAGCTCGTGAGGCCTTCAAGGACATTCAACTCTCCATCGATCACATCTTGTTCAAGATGCCACATGCTGGATTGAAGATAAAAGAGTCATATGAAGTTAATTCCAGAGGGTTAGAAATCTACTCGAAAAGTTGGCTTCCAGATAGTGGTTCCCCGAAAGCAGTCATTTGTTT...

Protein

2 records

下载 Protein FASTA

XP_057809590.1
MGSPVKFEGISEDLQKILDAEMDHVGPRRRAREAFKDIQLSIDHILFKMPHAGLKIKESYEVNSRGLEIYSKSWLPDSGSPKAVICFCHGYGDTCTFFFEGIARKLASSGYGVFAMDYPGFGLSEGLHGYIQNFDIMVEDVIEHYSKVKEDPNLHMLPCFLFGQSMGGAVALKVHLKQPDAWNGAILVAPMCKIADDMVPPWLVTQILTGMAKLLPRLKLVPQKDLAELAFRDERKRKQTVYNIVSYKHKPRLGTALELL...

XP_057809591.1
MGSPVKFEGISEDLQKILDAEMDHVGPRRRAREAFKDIQLSIDHILFKMPHAGLKIKESYEVNSRGLEIYSKSWLPDSGSPKAVICFCHGYGDTCTFFFEGIARKLASSGYGVFAMDYPGFGLSEGLHGYIQNFDIMVEDVIEHYSKVKEDPNLHMLPCFLFGQSMGGAVALKVHLKQPDAWNGAILVAPMCKIADDMVPPWLVTQILTGMAKLLPRLKLVPQKDLAELAFRDERKRKQTVYNIVSYKHKPRLGTALELL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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