Gene Card

Search by standard ID, NCBI Gene ID, GeneID, locus tag, transcript ID, protein ID, or a manually reviewed literature gene name. The page resolves the query to a Red Sage gene and integrates coordinates, sequences, annotations, subcellular localization, EMS variants, and downloads.

Resolved gene

`SmilChr04G003164`

Chromosome: Chr04 Coordinates: 48264670-48266751 Strand: - Biotype: protein_coding

Basic Information

Standard Gene ID	`SmilChr04G003164`
Name	SmilChr04G003164
Description	protein DETOXIFICATION 12-like
Chromosome / SeqID	Chr04 / NC_080390.1
Coordinates and Strand	48264670 - 48266751 / `-`

ID Mapping

NCBI Gene ID	`LOC131023957`
GeneID	`131023957`
locus_tag	`-`
NCBI Name	`LOC131023957`
Original query	`SmilChr04G003164`

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Functional Annotation

Source	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
Description	protein DETOXIFICATION 12-like
Product	protein DETOXIFICATION 12-like
Arabidopsis	`AT1G15170` (AT1G15170) MATE efflux family protein [Source:NCBI gene (formerly Entrezgene);Acc:838083] identity=52.5; qcov=1; evalue=5.15e-169; confidence=high
Rice	`Os01g0684900` - identity=55.4; qcov=0.998; evalue=4.13e-179; confidence=high
GO	GO:0015297 (antiporter activity); GO:0016020 (membrane); GO:0042910 (xenobiotic transmembrane transporter activity); GO:1990961 (xenobiotic detoxification by transmembrane export across the plasma membrane)
KEGG	-
Pfam	PF01554 (MatE)
InterPro	-
eggNOG	-
NR	GeneID:131023957

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Subcellular Localization Top 5

Rank	Location	Chinese	Score	Protein ID
1	Cell membrane	细胞膜	0.80000	`XP_057809610.1`
2	Vacuole	液泡	0.40000	`XP_057809610.1`
3	Vacuole membrane	液泡膜	0.40000	`XP_057809610.1`
4	Nucleus	细胞核	0.00000	`XP_057809610.1`
5	Chromosome	染色体	0.00000	`XP_057809610.1`

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EMS Mutant Variants

The table shows the first 12 candidate EMS variants for this gene. Open the EMS module for full filtering and downloads.

Position	REF	ALT	Type	Effect	Carriers	Samples
`Chr4:48265139`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B96,C66
`Chr4:48265162`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B122,B33,B41,D7
`Chr4:48265231`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B104,D10
`Chr4:48265543`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B13,B52
`Chr4:48266633`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B140,B67,B81,C21,C6

Open EMS variants

Predicted Protein Domains

Domain results are from the Pfam-A HMM database and HMMER hmmscan; positions are amino-acid coordinates on the corresponding protein sequence.

XP_057809610.1

483 aa

242

483

MatE

PF01554 MatE 24-183 aa PF01554 MatE 245-406 aa

XP_057809611.1

463 aa

232

463

MatE

PF01554 MatE 24-183 aa PF01554 MatE 245-406 aa

Protein ID	Source	Domain ID	Domain name	Type	Start aa	End aa	E-value	Score	Description
`XP_057809610.1`	Pfam	`PF01554`	MatE	Family	24	183	4.1e-56	189.8	MatE
`XP_057809610.1`	Pfam	`PF01554`	MatE	Family	245	406	4.1e-56	189.8	MatE
`XP_057809611.1`	Pfam	`PF01554`	MatE	Family	24	183	3.4e-56	190.1	MatE
`XP_057809611.1`	Pfam	`PF01554`	MatE	Family	245	406	3.4e-56	190.1	MatE

cDNA / CDS / Protein Sequences

Download genomic DNA (gene region only)

Every public gene has transcript sequence from the reference annotation. Protein-coding genes also have CDS and protein sequences. CDS and protein downloads do not apply to noncoding RNA. Version suffixes of original accessions are retained.

cDNA

2 records

Download cDNA FASTA

XM_057953628.1
ATGAGAGGAGAAGGCAAGAAATGGGAGGATTTGATGCAACAAGTGAAGAAAGTTGGGTACATAGCTGGGCCGATGGTGTTGGTATCGATGTTGCAGTATCTGCTGCAAGTGGTTTCCACGATGATGGTCGGCCACCTCGGCCGCCTCACGCTATCAAGCGTCGCCATCGCCACTTCTCTGACCAATGTCACCGGTTTCAGCCTTCTCTCAGGGCTGGTTGGCGGCTTGGAAACTCTGTGCGGGCAGGCCTACGGCGCGGG...

XM_057953627.1
ATGAGAGGAGAAGGCAAGAAATGGGAGGATTTGATGCAACAAGTGAAGAAAGTTGGGTACATAGCTGGGCCGATGGTGTTGGTATCGATGTTGCAGTATCTGCTGCAAGTGGTTTCCACGATGATGGTCGGCCACCTCGGCCGCCTCACGCTATCAAGCGTCGCCATCGCCACTTCTCTGACCAATGTCACCGGTTTCAGCCTTCTCTCAGGGCTGGTTGGCGGCTTGGAAACTCTGTGCGGGCAGGCCTACGGCGCGGG...

CDS

2 records

Download CDS FASTA

LOC131023957
ATGAGAGGAGAAGGCAAGAAATGGGAGGATTTGATGCAACAAGTGAAGAAAGTTGGGTACATAGCTGGGCCGATGGTGTTGGTATCGATGTTGCAGTATCTGCTGCAAGTGGTTTCCACGATGATGGTCGGCCACCTCGGCCGCCTCACGCTATCAAGCGTCGCCATCGCCACTTCTCTGACCAATGTCACCGGTTTCAGCCTTCTCTCAGGGCTGGTTGGCGGCTTGGAAACTCTGTGCGGGCAGGCCTACGGCGCGGG...

Protein

2 records

Download Protein FASTA

XP_057809610.1
MRGEGKKWEDLMQQVKKVGYIAGPMVLVSMLQYLLQVVSTMMVGHLGRLTLSSVAIATSLTNVTGFSLLSGLVGGLETLCGQAYGAGQYQKLGVYTYSAVFSLAAVCIPVSLAWVLMEKLLVAMGQDPLVSLQARDYSLRLIPALFAAAVSKPLVRYLQTQSLVLPMVVSSFVVLCCHIPTTWALVYKLDMGSSGAATAVCISNWLYVFVLAVYIRYSPSCKATRLAFSVEAFRHIGEFFRFAAPSAVMVCLKWWSLEVL...

XP_057809611.1
MRGEGKKWEDLMQQVKKVGYIAGPMVLVSMLQYLLQVVSTMMVGHLGRLTLSSVAIATSLTNVTGFSLLSGLVGGLETLCGQAYGAGQYQKLGVYTYSAVFSLAAVCIPVSLAWVLMEKLLVAMGQDPLVSLQARDYSLRLIPALFAAAVSKPLVRYLQTQSLVLPMVVSSFVVLCCHIPTTWALVYKLDMGSSGAATAVCISNWLYVFVLAVYIRYSPSCKATRLAFSVEAFRHIGEFFRFAAPSAVMVCLKWWSLEVL...

Flanking Sequence Downloads

Upstream/downstream length is capped at 10000 bp. Negative-strand genes are reverse-complemented so the exported FASTA follows transcriptional 5′ to 3′ orientation.

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