Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G003211`

染色体: Chr04 坐标: 48949281-48953028 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G003211`
名称	SmilChr04G003211
描述	cation/H(+) antiporter 1-like
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	48949281 - 48953028 / `-`

ID 对照

NCBI Gene ID	`LOC131020105`
GeneID	`131020105`
locus_tag	`-`
NCBI Name	`LOC131020105`
原始查询	`SmilChr04G003211`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	cation/H(+) antiporter 1-like
产物	cation/H(+) antiporter 1-like
Arabidopsis	`AT1G16380` (ATCHX1) Cation/hydrogen exchanger family protein [Source:NCBI gene (formerly Entrezgene);Acc:838208] identity=38.8; qcov=0.997; evalue=2.01e-156; confidence=medium
Rice	`Os02g0833500` (OsSTA85) - identity=32.8; qcov=1.04; evalue=1.8e-108; confidence=low
GO	GO:0006885 (regulation of pH); GO:0012505 (endomembrane system); GO:0015297 (antiporter activity); GO:0016020 (membrane); GO:1902600 (proton transmembrane transport)
KEGG	-
Pfam	PF00999 (Na_H_Exchanger); PF23256 (CHX17_2nd); PF23259 (CHX17_C)
InterPro	-
eggNOG	-
NR	GeneID:131020105

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057804758.1`
2	Vacuole	液泡	0.40000	`XP_057804758.1`
3	Vacuole membrane	液泡膜	0.40000	`XP_057804758.1`
4	Nucleus	细胞核	0.00000	`XP_057804758.1`
5	Chromosome	染色体	0.00000	`XP_057804758.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:48949959`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B57
`Chr4:48950056`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C35
`Chr4:48950169`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B34,C58
`Chr4:48950172`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A22,B136,C56,C83
`Chr4:48950190`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B40,B69
`Chr4:48950193`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B40,B69

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057804758.1

783 aa

392

783

Na_H_Exchanger

CHX17_2nd

CHX17_C

PF00999 Na_H_Exchanger 30-414 aa PF23256 CHX17_2nd 470-596 aa PF23259 CHX17_C 611-772 aa

XP_057804759.1

701 aa

350

701

Na_H_Exchanger

CHX17_2nd

CHX17_C

PF00999 Na_H_Exchanger 4-332 aa PF23256 CHX17_2nd 388-514 aa PF23259 CHX17_C 529-690 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057804758.1`	Pfam	`PF00999`	Na_H_Exchanger	Domain	30	414	5.4e-40	138.1	Sodium/hydrogen exchanger, transmembrane
`XP_057804758.1`	Pfam	`PF23256`	CHX17_2nd	Domain	470	596	1.3e-31	110.1	Plant cation/H(+) antiporter domain
`XP_057804758.1`	Pfam	`PF23259`	CHX17_C	Domain	611	772	9.7e-36	123.8	Plant cation/H(+) antiporter, C-terminal domain
`XP_057804759.1`	Pfam	`PF00999`	Na_H_Exchanger	Domain	4	332	7.2e-31	108.1	Sodium/hydrogen exchanger, transmembrane
`XP_057804759.1`	Pfam	`PF23256`	CHX17_2nd	Domain	388	514	1.1e-31	110.3	Plant cation/H(+) antiporter domain
`XP_057804759.1`	Pfam	`PF23259`	CHX17_C	Domain	529	690	9e-36	123.9	Plant cation/H(+) antiporter, C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057948775.1
GAGAGAGTGATGCATATATTCTAGGAGAACGAAAAGATAAAGCAGCTAAAAATCTTGAGCTGTTTAATCCATCCGGTTAGGACGGCCCTCCATCAACTAAATTAAGTATTAAAATTTGCGCAAGTTTTCCTTTTCCAAATCCCTTTCTCCTCTCAACCCAAGAAAAATGATGTTGCACAAATTTTCATGGAAGCAGGAGAATTTTGCATGCTAACATTCCCACCCACATTTGAAACATTTTTGCACTCTCATTTATCAAT...

XM_057948776.1
TTCGGCCGGAGCGGAGAATTTTTCAATCCGGTTCTGACGATGGGGGCGCAGGTTTCATGCCTTCTTGTGATCTCCCATTTCTTCCAGCTTCTGCTCAAGCCCTTGGGCCAACCAGCACCCCTCGCGCAAATTCTCGTAAGCAGGATTCGTGCTAGGCCCGTCTTGTTTATCACACATAGACAGTGTCAGAACATTCTTTTTTTATAATTCTGCAGACTACTATGAAACCATGGCACTATATGCTCGGATCGTTATCATGT...

CDS

2 records

下载 CDS FASTA

LOC131020105
ATGGACGATGGCTCGGATTGTTTCGGCCGGAGCGGAGAATTTTTCAATCCGGTTCTGACGATGGGGGCGCAGGTTTCATGCCTTCTTGTGATCTCCCATTTCTTCCAGCTTCTGCTCAAGCCCTTGGGCCAACCAGCACCCCTCGCGCAAATTCTCGCAGGATTCGTGCTAGGCCCGTCTTGTTTATCACACATAGACAGTGTCAGAACATTCTTTTTTTATAATTCTGCAGACTACTATGAAACCATGGCACTATATGC...

LOC131020105
ATGGCACTATATGCTCGGATCGTTATCATGTATCTTATCGGGCTTGAGATAGATTTTCCCTATCTAAGGCGCAACTTGCGAGTAGCAACCGTCATTGCCTGTGGAAGCAGTTTTATCTGTACGATATTTGCCATAGCTGTGACCTCTTTCATATATGAAGAGACGGGAGCTCAAGGTTCTACAGCCATGATGACTTTAACACTAGCAATCATCTTATGCAACACAGCCTCACCTTTCGTGACTTGCTTGGCACATGACCT...

Protein

2 records

下载 Protein FASTA

XP_057804758.1
MDDGSDCFGRSGEFFNPVLTMGAQVSCLLVISHFFQLLLKPLGQPAPLAQILAGFVLGPSCLSHIDSVRTFFFYNSADYYETMALYARIVIMYLIGLEIDFPYLRRNLRVATVIACGSSFICTIFAIAVTSFIYEETGAQGSTAMMTLTLAIILCNTASPFVTCLAHDLKFANSDLGRLAISSSLVADAYAVFLLIILSTNKRDFGFSDWLVRGILYLIIVITAIFLNINLADWLNRRQRNQKYLKNTELFALIAVLFVA...

XP_057804759.1
MALYARIVIMYLIGLEIDFPYLRRNLRVATVIACGSSFICTIFAIAVTSFIYEETGAQGSTAMMTLTLAIILCNTASPFVTCLAHDLKFANSDLGRLAISSSLVADAYAVFLLIILSTNKRDFGFSDWLVRGILYLIIVITAIFLNINLADWLNRRQRNQKYLKNTELFALIAVLFVAATSLETMGISSIFACFILGALFPRGGKAARTLLIKLSYSVHNFVLPFYFGYSGFKADLTHINSFRYFAVVAIVILLSIGGKV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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