Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr04G003243

染色体: Chr04 坐标: 49213890-49216930 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr04G003243
名称SmilChr04G003243
描述type IV inositol polyphosphate 5-phosphatase 9-like
染色体 / SeqIDChr04 / NC_080390.1
坐标与链方向49213890 - 49216930 / +

ID 对照

NCBI Gene IDLOC131020145
GeneID131020145
locus_tag-
NCBI NameLOC131020145
原始查询SmilChr04G003243

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述type IV inositol polyphosphate 5-phosphatase 9-like
产物type IV inositol polyphosphate 5-phosphatase 9-like
ArabidopsisAT2G01900 (AT2G01900)
DNAse I-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:814721]
identity=49.2; qcov=0.963; evalue=9.11e-126; confidence=high
RiceOs09g0394600
-
identity=54.3; qcov=0.819; evalue=4.12e-119; confidence=high
GOGO:0004439 (phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity); GO:0004445 (inositol-polyphosphate 5-phosphatase activity); GO:0034485 (phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity); GO:0046856 (phosphatidylinositol dephosphorylation)
KEGG-
PfamPF22669 (Exo_endo_phos2)
InterPro-
eggNOG-
NRGeneID:131020145

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cytoplasm 细胞质 0.80000 XP_057804814.1
2 Cytosol 细胞质基质 0.60000 XP_057804814.1
3 Nucleus 细胞核 0.00000 XP_057804814.1
4 Chromosome 染色体 0.00000 XP_057804814.1
5 Centromere 着丝粒 0.00000 XP_057804814.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr4:49214543 C T EMS_canonical_SNV CDS_variant 1 B46
Chr4:49214941 G A EMS_canonical_SNV stop_gained 1 B19
Chr4:49214941 G A EMS_canonical_SNV CDS_variant 1 B19
Chr4:49215274 G A EMS_canonical_SNV CDS_variant 1 B20
Chr4:49216656 C T EMS_canonical_SNV CDS_variant 4 A4,A9,B105,C74

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057804814.1
420 aa
N
1
210
420
Exo_endo_phos2
C
PF22669 Exo_endo_phos2 60-384 aa
XP_057804815.1
409 aa
N
1
204
409
Exo_endo_phos2
C
PF22669 Exo_endo_phos2 60-373 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057804814.1 Pfam PF22669 Exo_endo_phos2 Domain 60 384 5.9e-74 249.9 Endonuclease/Exonuclease/phosphatase family 2
XP_057804815.1 Pfam PF22669 Exo_endo_phos2 Domain 60 373 5.3e-61 207.4 Endonuclease/Exonuclease/phosphatase family 2

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XM_057948832.1
AATTCAAAGATTTTATGTGGTAAGGATTTGCTAGCGCAGCAATTATCGCCTGCCTAATTCTCGAAATGTCTAGCATTTCTCATCTCAAACTTATTTTAAGCTGCATTTCTTCAGACTTTTCGGCGTTGACTCTAACATCAAGTGGTAATGCAGATAAGAAAATTGTGATAACTGAGTATCTTATAAAGTAAAAGCTCATAATTATCTTAATAAGAGCAGTAAGTCTCTAAGCTAGGGTGCTGACTGTTGAGATCTTTGAA...
XM_057948831.1
TTCAAAGATTTTATGTGGTAAGGATTTGCTAGCGCAGCAATTATCGCCTGCCTAATTCTCGAAATGTCTAGCATTTCTCATCTCAAACTTATTTTAAGCTGCATTTCTTCAGACTTTTCGGCGTTGACTCTAACATCAAGTGGTAATGCAGATAAGAAAATTGTGATAACTGAGTATCTTATAAAGTAAAAGCTCATAATTATCTTAATAAGAGCAGTAAGTCTCTAAGCTAGGGTGCTGACTGTTGAGATCTTTGAATG...

CDS

2 records

下载 CDS FASTA
LOC131020145
ATGGTTGCAGAGCTTATCATGGAGGCAAGTAATATCCTTAGGAAAAGAGTGGTCGATGATTCTTTCATTCCACACTTTGGTAATATGCCAGAAACTTCAGCACAAAACTCAAATCAAGCTTACTTCAGCTCCCAAGAGTATTGTATTCCTCAAGGATCTTTCGAAGTGTTTGTAGGCTCTTGGAATGTAGGAGGCATCCGACCTCCAGACAACTTGAACCTCGACAAGTGGCTCAGTACTCAAGACACCATGGCAGATAT...
LOC131020145
ATGGTTGCAGAGCTTATCATGGAGGCAAGTAATATCCTTAGGAAAAGAGTGGTCGATGATTCTTTCATTCCACACTTTGGTAATATGCCAGAAACTTCAGCACAAAACTCAAATCAAGCTTACTTCAGCTCCCAAGAGTATTGTATTCCTCAAGGATCTTTCGAAGTGTTTGTAGGCTCTTGGAATGTAGGAGGCATCCGACCTCCAGACAACTTGAACCTCGACAAGTGGCTCAGTACTCAAGACACCATGGCAGATAT...

Protein

2 records

下载 Protein FASTA
XP_057804814.1
MVAELIMEASNILRKRVVDDSFIPHFGNMPETSAQNSNQAYFSSQEYCIPQGSFEVFVGSWNVGGIRPPDNLNLDKWLSTQDTMADIYVLGFQEIVPLTAGNILAAENSDISKHWNSLIKAALNKRTLTEDTLQKTEVGESQRIYPLRTQSSIKSNATDYKCIINKQMVGIYITMWARTDLHQYISNLGVSCVGCGILGRLGNKGSVSIRFCLHETSFCFVCSHLASGGKEGDERHRNADAAHILARTLFPPEPLQHLPR...
XP_057804815.1
MVAELIMEASNILRKRVVDDSFIPHFGNMPETSAQNSNQAYFSSQEYCIPQGSFEVFVGSWNVGGIRPPDNLNLDKWLSTQDTMADIYVLGFQEIVPLTAGNILAAENSDISKHWNSLIKAALNKRTLTEDTLQKTEVGESQRIYPLRTQSSIKSNATDYKCIINKQMVGIYITMWARTDLHQYISNLGVSCVGCGILGRLGNKGSVSIRFCLHETSFCFVCSHLASGGKEGDERHRNADAAHILARTLFPPEPLQHLPR...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

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