当前解析结果
SmilChr04G003243| 统一新 Gene ID | SmilChr04G003243 |
|---|---|
| 名称 | SmilChr04G003243 |
| 描述 | type IV inositol polyphosphate 5-phosphatase 9-like |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 49213890 - 49216930 / + |
| NCBI Gene ID | LOC131020145 |
|---|---|
| GeneID | 131020145 |
| locus_tag | - |
| NCBI Name | LOC131020145 |
| 原始查询 | SmilChr04G003243 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | type IV inositol polyphosphate 5-phosphatase 9-like |
| 产物 | type IV inositol polyphosphate 5-phosphatase 9-like |
| Arabidopsis | AT2G01900 (AT2G01900)DNAse I-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:814721] identity=49.2; qcov=0.963; evalue=9.11e-126; confidence=high |
| Rice | Os09g0394600- identity=54.3; qcov=0.819; evalue=4.12e-119; confidence=high |
| GO | GO:0004439 (phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity); GO:0004445 (inositol-polyphosphate 5-phosphatase activity); GO:0034485 (phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity); GO:0046856 (phosphatidylinositol dephosphorylation) |
| KEGG | - |
| Pfam | PF22669 (Exo_endo_phos2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131020145 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.80000 | XP_057804814.1 |
| 2 | Cytosol | 细胞质基质 | 0.60000 | XP_057804814.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057804814.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057804814.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057804814.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:49214543 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B46 |
Chr4:49214941 |
G |
A |
EMS_canonical_SNV | stop_gained | 1 | B19 |
Chr4:49214941 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B19 |
Chr4:49215274 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B20 |
Chr4:49216656 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A4,A9,B105,C74 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057804814.1PF22669
Exo_endo_phos2 60-384 aa
XP_057804815.1PF22669
Exo_endo_phos2 60-373 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057804814.1 |
Pfam | PF22669 |
Exo_endo_phos2 | Domain | 60 | 384 | 5.9e-74 | 249.9 | Endonuclease/Exonuclease/phosphatase family 2 |
XP_057804815.1 |
Pfam | PF22669 |
Exo_endo_phos2 | Domain | 60 | 373 | 5.3e-61 | 207.4 | Endonuclease/Exonuclease/phosphatase family 2 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。