Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G003244`

染色体: Chr04 坐标: 49215126-49221105 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G003244`
名称	SmilChr04G003244
描述	uncharacterized SmilChr04G003244
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	49215126 - 49221105 / `-`

ID 对照

NCBI Gene ID	`LOC131020146`
GeneID	`131020146`
locus_tag	`-`
NCBI Name	`LOC131020146`
原始查询	`SmilChr04G003244`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	hit=Os05g0387800; species=rice; confidence=high
产物	hit=Os05g0387800; species=rice; confidence=high
Arabidopsis	`AT1G18335` (AT1G18335) Acyl-CoA N-acyltransferases (NAT) superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:838414] identity=56.2; qcov=0.945; evalue=8.05e-89; confidence=high
Rice	`Os05g0387800` - identity=56.4; qcov=0.949; evalue=1.02e-93; confidence=high
GO	GO:0005634 (nucleus); GO:0010485 (histone H4 acetyltransferase activity); GO:0043967 (GO:0043967); GO:0043968 (GO:0043968); GO:0043998 (histone H2A acetyltransferase activity); GO:1990189 (protein N-terminal-serine acetyltransferase activity)
KEGG	-
Pfam	PF00583 (Acetyltransf_1)
InterPro	-
eggNOG	-
NR	GeneID:131020146

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057804817.1`
2	Nucleoplasm	核质	1.00000	`XP_057804817.1`
3	Cytoplasm	细胞质	1.00000	`XP_057804819.1`
4	Cytosol	细胞质基质	1.00000	`XP_057804819.1`
5	Nuclear body	核内小体	0.20000	`XP_057804817.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:49219806`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr4:49220190`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C32,C68

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057804817.1

268 aa

134

268

Acetyltransf_1

PF00583 Acetyltransf_1 143-218 aa

XP_057804818.1

261 aa

130

261

Acetyltransf_1

PF00583 Acetyltransf_1 143-218 aa

XP_057804819.1

256 aa

128

256

Acetyltransf_1

PF00583 Acetyltransf_1 131-206 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057804817.1`	Pfam	`PF00583`	Acetyltransf_1	Family	143	218	8.2e-09	36.5	Acetyltransferase (GNAT) family
`XP_057804818.1`	Pfam	`PF00583`	Acetyltransf_1	Family	143	218	7.7e-09	36.6	Acetyltransferase (GNAT) family
`XP_057804819.1`	Pfam	`PF00583`	Acetyltransf_1	Family	131	206	7.9e-09	36.5	Acetyltransferase (GNAT) family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XR_009100617.1
AAATATATAAATTGCAGACGAAATAAAACAAATGCGAGGGAAAGAACACAAGAATTTGCTCAAATGGAAGCTGGAGGAAAGAGTTGCGAGAGAGCAAGAAAGAAGACGCGAAGAGAGGCAGATACTGGAGAAGAAGAAAGCAACCGAGAACAGGATCAAAGCTGCTTCTTCGGTGAAAGATCATCTCACTAATTTCCCGCATTTTCGTCACTATCGAGGAAACGGATTGCATGCACATTTAGAGTCAGGACGTGGCGATA...

XM_057948834.1
ATTTTATTTCTCAACGAAAATATATAAATTGCAGACGAAATAAAACAAATGCGAGGGAAAGAACACAAGAATTTGCTCAAATGGAAGCTGGAGGAAAGAGTTGCGAGAGAGCAAGAAAGAAGACGCGAAGAGAGGCAGATACTGGAGAAGAAGAAAGCAACCGAGAACAGGATCAAAGCTGCTTCTTCGGTGAAAGATCATCTCACTAATTTCCCGCATTTTCGTCACTATCGAGGAAACGGATTGCATGCACATTTAGA...

CDS

3 records

下载 CDS FASTA

LOC131020146
ATGCGAGGGAAAGAACACAAGAATTTGCTCAAATGGAAGCTGGAGGAAAGAGTTGCGAGAGAGCAAGAAAGAAGACGCGAAGAGAGGCAGATACTGGAGAAGAAGAAAGCAACCGAGAACAGGATCAAAGCTGCTTCTTCGGTGAAAGATCATCTCACTAATTTCCCGCATTTTCGTCACTATCGAGGAAACGGATTGCATGCACATTTAGAGTCAGGACGTGGCGATAGGCTCCCAGTTCGTACAAAACAATACATTCA...

Protein

3 records

下载 Protein FASTA

XP_057804817.1
MRGKEHKNLLKWKLEERVAREQERRREERQILEKKKATENRIKAASSVKDHLTNFPHFRHYRGNGLHAHLESGRGDRLPVRTKQYIQNLLKLNMEAPFGSEWPDEEKIKRRDTVAPEARYIFVHEVSDEDADKVSELRDMGKACNCNGPIVGFVHYRFTLEEEVPVLYVYELQLEHRVQGKGLGKFLMQLIELIASQNGMGAVVLTVQRANPLAMNFYIQKLRYTIAAISPSKVNPLGPERNYEILCKSLDHEAQAVLEA...

XP_057804818.1
MRGKEHKNLLKWKLEERVAREQERRREERQILEKKKATENRIKAASSVKDHLTNFPHFRHYRGNGLHAHLESGRGDRLPVRTKQYIQNLLKLNMEAPFGSEWPDEEKIKRRDTVAPEARYIFVHEVSDEDADKVSELRDMGKACNCNGPIVGFVHYRFTLEEEVPVLYVYELQLEHRVQGKGLGKFLMQLIELIASQNGMGAVVLTVQRANPLAMNFYIQKLRYTIAAISPSKVNPLGPERNYEILCAPRYHIQHMRHPD...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器