Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G003255`

染色体: Chr04 坐标: 49293159-49295335 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G003255`
名称	SmilChr04G003255
描述	heavy metal-associated isoprenylated plant protein 7-like
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	49293159 - 49295335 / `-`

ID 对照

NCBI Gene ID	`LOC131020158`
GeneID	`131020158`
locus_tag	`-`
NCBI Name	`LOC131020158`
原始查询	`SmilChr04G003255`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	heavy metal-associated isoprenylated plant protein 7-like
产物	heavy metal-associated isoprenylated plant protein 7-like
Arabidopsis	`AT5G50740` (AT5G50740) Heavy metal transport/detoxification superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:835146] identity=55.8; qcov=0.87; evalue=2.88e-76; confidence=high
Rice	`Os02g0510600` - identity=43.9; qcov=0.958; evalue=8.83e-59; confidence=medium
GO	GO:0046872 (metal ion binding)
KEGG	-
Pfam	PF00403 (HMA)
InterPro	-
eggNOG	-
NR	GeneID:131020158

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057804831.1`
2	Cytoplasm	细胞质	0.20000	`XP_057804831.1`
3	Nucleus	细胞核	0.00000	`XP_057804831.1`
4	Chromosome	染色体	0.00000	`XP_057804831.1`
5	Centromere	着丝粒	0.00000	`XP_057804831.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:49293568`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B118,C32
`Chr4:49293574`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B36
`Chr4:49293670`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C10
`Chr4:49294233`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C57,D11
`Chr4:49294283`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr4:49294630`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B114,C19
`Chr4:49294640`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B130,B63,C12,D11
`Chr4:49294642`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C10
`Chr4:49294674`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B66,C10

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057804831.1

307 aa

154

307

HMA

PF00403 HMA 50-103 aa PF00403 HMA 154-200 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057804831.1`	Pfam	`PF00403`	HMA	Domain	50	103	1.3e-24	87.0	Heavy-metal-associated domain
`XP_057804831.1`	Pfam	`PF00403`	HMA	Domain	154	200	1.3e-24	87.0	Heavy-metal-associated domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057948848.1
CATTACATATAAAAAAAATATTTTCCACGTCAAAATCAAAGTTTTCAATTCCTTTACGAAATATTGAAAGCAGTAGGTCAAAATTGACAAAGAATTTCCGAATTTCCAGTATAGAAACTAGATAGTAGATAAGTGAAGGAGAAAAGGTATCTGAACCGGCTGCCAAAAATGGGTAGCGAAAATAATCACGCATAGAAAATCGTAACACGCAACGACGCCGTTTGGAGGAGAATAGTTTCCAGCGCAAGTGCGCCCTCGCA...

CDS

1 records

下载 CDS FASTA

LOC131020158
ATGGGCGAGGAGGAGAAAAAGCCGGCAGAGGAAAAGAAGCCGGCTGCGGAGGAGGAGAAGAAAGAAGAAGCTCCGAAGGCGGCGGAAGATGGGAAGAAAGAGGATGAAGCGAAGGCGGAGCCTCCGCCGCTGCCGCAGGAAATCGTTTTGAAGGTGTTCATGCACTGTGAGGGCTGCGCGAGAAAAGTCCGGAGGTGTCTCAAAGGATTTGAAGGAGTGGAGAGTGTGACAACAGATTGCAGAACGAGTAAGGTGGTGGT...

Protein

1 records

下载 Protein FASTA

XP_057804831.1
MGEEEKKPAEEKKPAAEEEKKEEAPKAAEDGKKEDEAKAEPPPLPQEIVLKVFMHCEGCARKVRRCLKGFEGVESVTTDCRTSKVVVKGEKADPVKVFERVQRKSHRQVELISPIPKPPAPPEEPQKPPEKEEVKAEEKKEEPCVITVVLGVYMHCDACAQEIRKRILRMKGIESAEADLKSSQVIVKGVVDPKSLADHVYKKTGKHAAIVKVEPEKKEEEKSKEEKKAEDGKSEAKKAEEDGKENKESGGEVVVVEEDP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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