Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G003269`

染色体: Chr04 坐标: 49389698-49398896 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G003269`
名称	SmilChr04G003269
描述	uncharacterized SmilChr04G003269
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	49389698 - 49398896 / `-`

ID 对照

NCBI Gene ID	`LOC131020170`
GeneID	`131020170`
locus_tag	`-`
NCBI Name	`LOC131020170`
原始查询	`SmilChr04G003269`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	DnaJ heat shock amino-terminal domain protein [Source:NCBI gene (formerly Entrezgene);Acc:835396]; symbol=AT5G53150; hit=AT5G53150; species=arabidopsis; confidence=medium
产物	DnaJ heat shock amino-terminal domain protein [Source:NCBI gene (formerly Entrezgene);Acc:835396]; symbol=AT5G53150; hit=AT5G53150; species=arabidopsis; confidence=medium
Arabidopsis	`AT5G53150` (AT5G53150) DnaJ heat shock amino-terminal domain protein [Source:NCBI gene (formerly Entrezgene);Acc:835396] identity=38.5; qcov=0.912; evalue=1.08e-159; confidence=medium
Rice	`Os02g0510000` (OsDjC18) - identity=40.8; qcov=0.677; evalue=6.86e-116; confidence=medium
GO	-
KEGG	-
Pfam	PF00226 (DnaJ); PF11926 (DUF3444); PF23551 (Zn_ribbon_20)
InterPro	-
eggNOG	-
NR	GeneID:131020170

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057804840.1`
2	Chromosome	染色体	0.00000	`XP_057804840.1`
3	Centromere	着丝粒	0.00000	`XP_057804840.1`
4	Chromatin	染色质	0.00000	`XP_057804840.1`
5	Telomere	端粒	0.00000	`XP_057804840.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:49394102`	`AT`	`A`	1bp_deletion	frameshift_variant	3	C42,C60,D2
`Chr4:49394102`	`AT`	`A`	1bp_deletion	CDS_variant	3	C42,C60,D2
`Chr4:49394110`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A6,B45,B97,C86
`Chr4:49394209`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B41,B68,C14
`Chr4:49394222`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C84
`Chr4:49394529`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B41,B68,C14
`Chr4:49394713`	`TG`	`T`	1bp_deletion	frameshift_variant	1	C38
`Chr4:49394713`	`TG`	`T`	1bp_deletion	CDS_variant	1	C38
`Chr4:49394825`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B120,D11
`Chr4:49394923`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	C3,C42,C60,D2
`Chr4:49394933`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr4:49394994`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A6,B45,B97,C86

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057804840.1

803 aa

402

803

DnaJ

Zn_ribbon_20

DUF3444

PF00226 DnaJ 66-127 aa PF23551 Zn_ribbon_20 242-275 aa PF11926 DUF3444 504-708 aa

XP_057804841.1

803 aa

402

803

DnaJ

Zn_ribbon_20

DUF3444

PF00226 DnaJ 66-127 aa PF23551 Zn_ribbon_20 242-275 aa PF11926 DUF3444 504-708 aa

XP_057804842.1

803 aa

402

803

DnaJ

Zn_ribbon_20

DUF3444

PF00226 DnaJ 66-127 aa PF23551 Zn_ribbon_20 242-275 aa PF11926 DUF3444 504-708 aa

XP_057804843.1

803 aa

402

803

DnaJ

Zn_ribbon_20

DUF3444

PF00226 DnaJ 66-127 aa PF23551 Zn_ribbon_20 242-275 aa PF11926 DUF3444 504-708 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057804840.1`	Pfam	`PF00226`	DnaJ	Domain	66	127	5.5e-18	65.5	DnaJ domain
`XP_057804840.1`	Pfam	`PF23551`	Zn_ribbon_20	Domain	242	275	7.3e-09	36.3	Zinc beta-ribbon domain
`XP_057804840.1`	Pfam	`PF11926`	DUF3444	Family	504	708	7.8e-72	242.0	Domain of unknown function (DUF3444)
`XP_057804841.1`	Pfam	`PF00226`	DnaJ	Domain	66	127	5.5e-18	65.5	DnaJ domain
`XP_057804841.1`	Pfam	`PF23551`	Zn_ribbon_20	Domain	242	275	7.3e-09	36.3	Zinc beta-ribbon domain
`XP_057804841.1`	Pfam	`PF11926`	DUF3444	Family	504	708	7.8e-72	242.0	Domain of unknown function (DUF3444)
`XP_057804842.1`	Pfam	`PF00226`	DnaJ	Domain	66	127	5.5e-18	65.5	DnaJ domain
`XP_057804842.1`	Pfam	`PF23551`	Zn_ribbon_20	Domain	242	275	7.3e-09	36.3	Zinc beta-ribbon domain
`XP_057804842.1`	Pfam	`PF11926`	DUF3444	Family	504	708	7.8e-72	242.0	Domain of unknown function (DUF3444)
`XP_057804843.1`	Pfam	`PF00226`	DnaJ	Domain	66	127	5.5e-18	65.5	DnaJ domain
`XP_057804843.1`	Pfam	`PF23551`	Zn_ribbon_20	Domain	242	275	7.3e-09	36.3	Zinc beta-ribbon domain
`XP_057804843.1`	Pfam	`PF11926`	DUF3444	Family	504	708	7.8e-72	242.0	Domain of unknown function (DUF3444)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057948860.1
GGCTTTCAGTTCACCACCTTAATTAGAGGAAATTCCCAGTTATTTTTAATGCACAATTTATCAACAAAATATTAATTTCCTTTTCCAATTTCTCTGTCAAGGCGTTTTGATTATCCTATTTCAGTGTTCCTTAATTCTGAAATTCAACATTGTTCAATGCATACTCTGTTGATCTGAGCACTGAAACACCCTTGAAAACCTATTTAGCTCTCTTTCTTTCTTTTTAGCTTTACAAATTCTTTGAAAATCTTTTATTTAGT...

XM_057948859.1
GGCTTTCAGTTCACCACCTTAATTAGAGGAAATTCCCAGTTATTTTTAATGCACAATTTATCAACAAAATATTAATTTCCTTTTCCAATTTCTCTGTCAAGGCGTTTTGATTATCCTATTTCAGTGTTCCTTAATTCTGAAATTCAACATTGTTCAATGCATACTCTGTTGATCTGAGCACTGAAACACCCTTGAAAACCTATTTAGCTCTCTTTCTTTCTTTTTAGCTTTACAAATTCTTTGAAAATCTTTTATTTAGT...

CDS

4 records

下载 CDS FASTA

LOC131020170
ATGGAGTGCAATAAAGATGAAGCTGTCAGGGCTAAAGGAATTGCAGAGAATAAGCTACTAGAGAGAGATATTGCTGGAGCTAAAATGTTCGGTTTAAAGGCTCAAAGCCTCTTCCCTGAGCTTGATGGTCTGTCTCAGTTCCTTGAGATCATTGATGTCTATGTAGCCCATGAGAAGAAAATAAATGGAGTATCAGACTATTATGGCATTTTTGGGTTAGATCCATTTTGTGATGAAGAGATTTTAAGGAAACAATACAA...

Protein

4 records

下载 Protein FASTA

XP_057804840.1
MECNKDEAVRAKGIAENKLLERDIAGAKMFGLKAQSLFPELDGLSQFLEIIDVYVAHEKKINGVSDYYGIFGLDPFCDEEILRKQYKRMALFLHPDKNKSVGAEGAFQIMSEAWSVLSDKDKRSEYDLKVNLRSSNQTASFNTSNVKYTTPATDPQRAATRSNFQQSPVTSMQFQTIYDPLLPRNTAPPSGNHSQIHKFRKNPLPAFAAQYIPTPSPPFHNSNVPSRNQMTSSSCSFRPDTFWTLCNRCNVQYEYKNIYL...

XP_057804841.1
MECNKDEAVRAKGIAENKLLERDIAGAKMFGLKAQSLFPELDGLSQFLEIIDVYVAHEKKINGVSDYYGIFGLDPFCDEEILRKQYKRMALFLHPDKNKSVGAEGAFQIMSEAWSVLSDKDKRSEYDLKVNLRSSNQTASFNTSNVKYTTPATDPQRAATRSNFQQSPVTSMQFQTIYDPLLPRNTAPPSGNHSQIHKFRKNPLPAFAAQYIPTPSPPFHNSNVPSRNQMTSSSCSFRPDTFWTLCNRCNVQYEYKNIYL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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