当前解析结果
SmilChr04G003300| 统一新 Gene ID | SmilChr04G003300 |
|---|---|
| 名称 | SmilChr04G003300 |
| 描述 | bidirectional sugar transporter SWEET13-like |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 49713718 - 49715006 / + |
| NCBI Gene ID | LOC131020198 |
|---|---|
| GeneID | 131020198 |
| locus_tag | - |
| NCBI Name | LOC131020198 |
| 原始查询 | SmilChr04G003300 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | bidirectional sugar transporter SWEET13-like |
| 产物 | bidirectional sugar transporter SWEET13-like |
| Arabidopsis | AT5G50790 (SWEET10)Nodulin MtN3 family protein [Source:NCBI gene (formerly Entrezgene);Acc:835151] identity=58.6; qcov=0.954; evalue=3.94e-85; confidence=high |
| Rice | Os12g0476200 (SWEET13)- identity=63.2; qcov=1.01; evalue=5.76e-93; confidence=high |
| GO | GO:0008643 (carbohydrate transport); GO:0016020 (membrane); GO:0051119 (sugar transmembrane transporter activity) |
| KEGG | - |
| Pfam | PF03083 (MtN3_slv) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131020198 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Vacuole membrane | 液泡膜 | 0.60000 | XP_057804876.1 |
| 2 | Cell membrane | 细胞膜 | 0.40000 | XP_057804876.1 |
| 3 | Vacuole | 液泡 | 0.20000 | XP_057804876.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057804876.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057804876.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:49714163 |
C |
CA |
1bp_insertion | frameshift_variant | 12 | A14,A16,B1,B119,B127,B27,B42,B43,C22,C24,C78,D5 |
Chr4:49714290 |
TGA |
T |
2bp_deletion | frameshift_variant | 1 | C58 |
Chr4:49714290 |
TGA |
T |
2bp_deletion | CDS_variant | 1 | C58 |
Chr4:49714535 |
TC |
T |
1bp_deletion | frameshift_variant | 6 | B107,B128,B2,B76,C16,C27 |
Chr4:49714557 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B108,B125,B90,B92,C87 |
Chr4:49714863 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A18 |
Chr4:49714898 |
A |
AC |
1bp_insertion | frameshift_variant | 32 | A22,B1,B10,B109,B112,B25,B26,B33,B4,B51,B59,B70,B75,B82,B84,B85,B86,B89,C19,C20,C21,C46,C50,C56,C59,C65,C73,C74,C8,C81,C82,C86 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057804876.1PF03083
MtN3_slv 11-96 aa
PF03083
MtN3_slv 130-213 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057804876.1 |
Pfam | PF03083 |
MtN3_slv | Repeat | 11 | 96 | 4.2e-51 | 171.6 | Sugar efflux transporter for intercellular exchange |
XP_057804876.1 |
Pfam | PF03083 |
MtN3_slv | Repeat | 130 | 213 | 4.2e-51 | 171.6 | Sugar efflux transporter for intercellular exchange |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。