Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G003341`

染色体: Chr04 坐标: 50075879-50081582 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G003341`
名称	SmilChr04G003341
描述	cyclin-dependent kinase D-3-like
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	50075879 - 50081582 / `+`

ID 对照

NCBI Gene ID	`LOC131020239`
GeneID	`131020239`
locus_tag	`-`
NCBI Name	`LOC131020239`
原始查询	`SmilChr04G003341`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	cyclin-dependent kinase D-3-like
产物	cyclin-dependent kinase D-3-like
Arabidopsis	`AT1G18040` (CDKD1;3) cyclin-dependent kinase D1;3 [Source:NCBI gene (formerly Entrezgene);Acc:838384] identity=72.8; qcov=0.957; evalue=0; confidence=high
Rice	`Os02g0123100` (cdc2Os-2) - identity=45.8; qcov=0.681; evalue=3.02e-85; confidence=high
GO	GO:0004693 (cyclin-dependent protein serine/threonine kinase activity); GO:0005524 (ATP binding); GO:0005634 (nucleus); GO:0005675 (transcription factor TFIIH holo complex); GO:0005737 (cytoplasm); GO:0006468 (protein phosphorylation); GO:0008353 (RNA polymerase II CTD heptapeptide repeat kinase activity); GO:0045944 (positive regulation of transcription by RNA polymerase II); GO:0070985 (transcription factor TFIIK complex)
KEGG	smil03022 (Basal transcription factors - Salvia miltiorrhiza (redroot sage)); smil03420 (Nucleotide excision repair - Salvia miltiorrhiza (redroot sage))
Pfam	PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr)
InterPro	-
eggNOG	-
NR	GeneID:131020239

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057804928.1`
2	Nucleoplasm	核质	1.00000	`XP_057804928.1`
3	Cytoplasm	细胞质	0.80000	`XP_057804928.1`
4	Cytosol	细胞质基质	0.60000	`XP_057804928.1`
5	Nuclear body	核内小体	0.20000	`XP_057804928.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:50077178`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B43,C27,C37
`Chr4:50077222`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B24
`Chr4:50077230`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A16,B139,C72
`Chr4:50077434`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C29
`Chr4:50077515`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr4:50077900`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C68,D10
`Chr4:50077972`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057804928.1

423 aa

212

423

Pkinase

PK_Tyr_Ser-Thr

PF00069 Pkinase 17-296 aa PF07714 PK_Tyr_Ser-Thr 20-209 aa

XP_057804929.1

423 aa

212

423

Pkinase

PK_Tyr_Ser-Thr

PF00069 Pkinase 17-296 aa PF07714 PK_Tyr_Ser-Thr 20-209 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057804928.1`	Pfam	`PF00069`	Pkinase	Domain	17	296	1.8e-70	238.0	Protein kinase domain
`XP_057804928.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	20	209	2.8e-27	96.4	Protein tyrosine and serine/threonine kinase
`XP_057804929.1`	Pfam	`PF00069`	Pkinase	Domain	17	296	1.8e-70	238.0	Protein kinase domain
`XP_057804929.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	20	209	2.8e-27	96.4	Protein tyrosine and serine/threonine kinase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057948945.1
AAGACAACAATGATTCCCTAATCCCCTTTGGAGATTTTTCATCAAACCTTATTCACACCAAAAAATTTTGTTTTGCCGAAGTGTGAAACCCCATTAACAAAAGTTGAAACACAGACCCACACGCAGCTCTCCGCAGCCTACACACAGTCACACACTACGCTCCCCCCGGCTTCCCCCCAATTGCAATTGCATTTGCATTTGCATCTATCTTCACACGATTGCATATCATATGTTCTTGGCTCACAGCTCAGTTTTATCGC...

XM_057948946.1
AAGACAACAATGATTCCCTAATCCCCTTTGGAGATTTTTCATCAAACCTTATTCACACCAAAAAATTTTGTTTTGCCGAAGTGTGAAACCCCATTAACAAAAGTTGAAACACAGACCCACACGCAGCTCTCCGCAGCCTACACACAGTCACACACTACGCTCCCCCCGGCTTCCCCCCAATTGCAATTGCATTTGCATTTGCATCTATCTTCACACGATTGCATATCATATGTTCTTGGCTCACAGCTCAGTTTTATCGC...

CDS

2 records

下载 CDS FASTA

LOC131020239
ATGGCGGACATGGATCAGTTGTTGACCAAGAAAGTAGCCGATCGTTATCTGAAGCGCGAAGTTCTTGGTGAAGGTACATACGGTGTCGTTTACAAAGCCATCGATACTAAGACTGGGCAAGTTGTTGCTATCAAGAAAATTCGTTTGGGGAAGCAGAAGGAAGGTGTCAATTTTACAGCTTTAAGGGAAATTAAGTTGCTCAAAGAGCTCAAGGATCCTAATATCATCGAGTTGATTGATGCATTCCCTCACAAGGGGAA...

Protein

2 records

下载 Protein FASTA

XP_057804928.1
MADMDQLLTKKVADRYLKREVLGEGTYGVVYKAIDTKTGQVVAIKKIRLGKQKEGVNFTALREIKLLKELKDPNIIELIDAFPHKGNLHLVFEFMETDLEAVIRDRNIVLSPADIKSYIQMTLKGLSFCHKKWVLHRDMKPNNLLIGPGGQLKLADFGLARIFGSPDRRFTHQVFARWYRAPELLFGAKQYGPGVDVWAAACIFAELLLRRPFLQGNSDIDQLGKIFAAFGTPKPSQWSDMVYLPDYVEYQHVPGQPMRT...

XP_057804929.1
MADMDQLLTKKVADRYLKREVLGEGTYGVVYKAIDTKTGQVVAIKKIRLGKQKEGVNFTALREIKLLKELKDPNIIELIDAFPHKGNLHLVFEFMETDLEAVIRDRNIVLSPADIKSYIQMTLKGLSFCHKKWVLHRDMKPNNLLIGPGGQLKLADFGLARIFGSPDRRFTHQVFARWYRAPELLFGAKQYGPGVDVWAAACIFAELLLRRPFLQGNSDIDQLGKIFAAFGTPKPSQWSDMVYLPDYVEYQHVPGQPMRT...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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