Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G003362`

染色体: Chr04 坐标: 50206803-50211700 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G003362`
名称	SmilChr04G003362
描述	uncharacterized SmilChr04G003362
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	50206803 - 50211700 / `-`

ID 对照

NCBI Gene ID	`LOC131020258`
GeneID	`131020258`
locus_tag	`-`
NCBI Name	`LOC131020258`
原始查询	`SmilChr04G003362`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	C3HC zinc finger-like protein [Source:NCBI gene (formerly Entrezgene);Acc:841317]; symbol=AT1G48950; hit=AT1G48950; species=arabidopsis; confidence=medium
产物	C3HC zinc finger-like protein [Source:NCBI gene (formerly Entrezgene);Acc:841317]; symbol=AT1G48950; hit=AT1G48950; species=arabidopsis; confidence=medium
Arabidopsis	`AT1G48950` (AT1G48950) C3HC zinc finger-like protein [Source:NCBI gene (formerly Entrezgene);Acc:841317] identity=42.5; qcov=1.01; evalue=1.28e-138; confidence=medium
Rice	`Os01g0605650` - identity=34.2; qcov=1.13; evalue=7.04e-103; confidence=low
GO	GO:0005634 (nucleus); GO:0008270 (zinc ion binding)
KEGG	-
Pfam	PF07967 (zf-C3HC)
InterPro	-
eggNOG	-
NR	GeneID:131020258

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057804948.1`
2	Chromosome	染色体	0.00000	`XP_057804948.1`
3	Centromere	着丝粒	0.00000	`XP_057804948.1`
4	Chromatin	染色质	0.00000	`XP_057804948.1`
5	Telomere	端粒	0.00000	`XP_057804948.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:50207114`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B33,B4,B89,C19,C86
`Chr4:50208208`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A22,B132,B88
`Chr4:50208440`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D3
`Chr4:50208806`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B131
`Chr4:50208863`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A25,B36
`Chr4:50209006`	`C`	`T`	EMS_canonical_SNV	stop_gained	1	C60
`Chr4:50209006`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C60
`Chr4:50209970`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C77,C81
`Chr4:50209994`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B10,B75,C73,C74
`Chr4:50210015`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B41
`Chr4:50210106`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B73
`Chr4:50210540`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B127

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057804948.1

636 aa

318

636

zf-C3HC

PF07967 zf-C3HC 76-199 aa

XP_057804949.1

610 aa

305

610

zf-C3HC

PF07967 zf-C3HC 76-199 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057804948.1`	Pfam	`PF07967`	zf-C3HC	Domain	76	199	3.2e-33	115.3	NuBaID N-terminal domain (aka zf-C3HC)
`XP_057804949.1`	Pfam	`PF07967`	zf-C3HC	Domain	76	199	3.4e-33	115.2	NuBaID N-terminal domain (aka zf-C3HC)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XR_009100643.1
ACTAATGTACAAAAGAAATTTACAAAAAAAATGGAGAAGAATTTGGTGTCACTTGTCAGTTAAAAATATATATCAGCTTCCGGGCCTCCGGCCTCCGTAGAGAGAGAGACGGAAGAAGAAAGATGACAGAAGAGTCTGAAAAGAGGTTCGAAGCGATAATGAAGAAGCTCTTTCATGCTCCTTCAAATTCTAGACCCCAATCTTCCGACGCCAGTGGTCTCGGAGCTAAACAATTAAGCGGCCGAAAGCGCCCCCATTCG...

XM_057948965.1
AAACATACACATGAAATACTAATGTACAAAAGAAATTTACAAAAAAAATGGAGAAGAATTTGGTGTCACTTGTCAGTTAAAAATATATATCAGCTTCCGGGCCTCCGGCCTCCGTAGAGAGAGAGACGGAAGAAGAAAGATGACAGAAGAGTCTGAAAAGAGGTTCGAAGCGATAATGAAGAAGCTCTTTCATGCTCCTTCAAATTCTAGACCCCAATCTTCCGACGCCAGTGGTCTCGGAGCTAAACAATTAAGCGGCC...

CDS

2 records

下载 CDS FASTA

LOC131020258
ATGACAGAAGAGTCTGAAAAGAGGTTCGAAGCGATAATGAAGAAGCTCTTTCATGCTCCTTCAAATTCTAGACCCCAATCTTCCGACGCCAGTGGTCTCGGAGCTAAACAATTAAGCGGCCGAAAGCGCCCCCATTCGTCTTCAGTGGGGAGGAAATTAGGTGGCAATGAATCGGGGGGCTCATTATCAGTTTTGCCAGCGGCGGCTCAAGCACCGGTCTGCAGGCCTTGGGACCGTGGCGATTTGGTTAGGAGGTTGTC...

Protein

2 records

下载 Protein FASTA

XP_057804948.1
MTEESEKRFEAIMKKLFHAPSNSRPQSSDASGLGAKQLSGRKRPHSSSVGRKLGGNESGGSLSVLPAAAQAPVCRPWDRGDLVRRLSTFKSMTWFAKPQVVSPLECARRGWVNVDMDTIACVSCNTRLLFSTPSAWAKQQVEKAAMVFSLKLESGHNLLCPWTNNSCAEELAQFPNLSGASLIEDYKGRFLSLSQLIALPVIAPMTIDDLRTSQLEQFLSDSSSLGCHEPLESSGTESSGHVPATSSSILYYQAQKLISL...

XP_057804949.1
MTEESEKRFEAIMKKLFHAPSNSRPQSSDASGLGAKQLSGRKRPHSSSVGRKLGGNESGGSLSVLPAAAQAPVCRPWDRGDLVRRLSTFKSMTWFAKPQVVSPLECARRGWVNVDMDTIACVSCNTRLLFSTPSAWAKQQVEKAAMVFSLKLESGHNLLCPWTNNSCAEELAQFPNLSGASLIEDYKGRFLSLSQLIALPVIAPMTIDDLRTSQLEQFLSDSSSLGCHEPLESSGTESSGHVPATSSSILYYQAQKLISL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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