Gene Card

Search by standard ID, NCBI Gene ID, GeneID, locus tag, transcript ID, protein ID, or a manually reviewed literature gene name. The page resolves the query to a Red Sage gene and integrates coordinates, sequences, annotations, subcellular localization, EMS variants, and downloads.

Resolved gene

`SmilChr04G003366`

Chromosome: Chr04 Coordinates: 50243518-50249100 Strand: + Biotype: protein_coding

Basic Information

Standard Gene ID	`SmilChr04G003366`
Name	SmilChr04G003366
Description	uncharacterized SmilChr04G003366
Chromosome / SeqID	Chr04 / NC_080390.1
Coordinates and Strand	50243518 - 50249100 / `+`

ID Mapping

NCBI Gene ID	`LOC131020264`
GeneID	`131020264`
locus_tag	`-`
NCBI Name	`LOC131020264`
Original query	`SmilChr04G003366`

Open ID mapping

Functional Annotation

Source	GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog
Description	polarity axis stabilization protein [Source:NCBI gene (formerly Entrezgene);Acc:843730]; symbol=AT1G73930; hit=AT1G73930; species=arabidopsis; confidence=high
Product	polarity axis stabilization protein [Source:NCBI gene (formerly Entrezgene);Acc:843730]; symbol=AT1G73930; hit=AT1G73930; species=arabidopsis; confidence=high
Arabidopsis	`AT1G73930` (AT1G73930) polarity axis stabilization protein [Source:NCBI gene (formerly Entrezgene);Acc:843730] identity=69.8; qcov=0.982; evalue=0; confidence=high
Rice	`Os03g0259700` - identity=58.5; qcov=0.998; evalue=0; confidence=high
GO	GO:0005085 (guanyl-nucleotide exchange factor activity); GO:0055037 (recycling endosome)
KEGG	-
Pfam	-
InterPro	-
eggNOG	-
NR	GeneID:131020264

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Subcellular Localization Top 5

Rank	Location	Chinese	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057804954.1`
2	Golgi apparatus	高尔基体	1.00000	`XP_057804954.1`
3	Trans-golgi network	Trans-golgi network	1.00000	`XP_057804954.1`
4	Cytosol	细胞质基质	0.80000	`XP_057804954.1`
5	Cytoplasmic vesicle	细胞质囊泡	0.60000	`XP_057804954.1`

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EMS Mutant Variants

The table shows the first 12 candidate EMS variants for this gene. Open the EMS module for full filtering and downloads.

Position	REF	ALT	Type	Effect	Carriers	Samples
`Chr4:50244836`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B60
`Chr4:50244842`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B98,C86,D10
`Chr4:50244870`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B48,D10,D5
`Chr4:50244900`	`C`	`T`	EMS_canonical_SNV	stop_gained	88	A10,A13,A16,A18,A19,A21,A3,A4,A7,B1,B10,B100,B11,B110,B113,B114,B118,B120,B122,B125,B126,B127,B13,B131,B133,B135,B136,B137,B21,B27,B28,B29,B32,B33,B38,B40,B42,B43,B47,B48,B49,B50,B51,B63,B69,B73,B76,B78,B83,B84,B85,B87,B91,B94,B95,B98,B99,C1,C10,C12,C14,C18,C22,C28,C33,C39,C4,C42,C44,C46,C47,C48,C51,C56,C57,C58,C6,C67,C69,C70,C74,C80,C84,D1,D10,D5,D7,D9
`Chr4:50244936`	`C`	`CTA`	2bp_insertion	frameshift_variant	16	A13,A21,A3,A4,B1,B114,B27,B63,B91,C10,C39,C51,C56,C57,C58,D5
`Chr4:50245025`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B99
`Chr4:50245298`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C57
`Chr4:50245441`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	C24,C78,C85
`Chr4:50245872`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B48,B60
`Chr4:50245908`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D7
`Chr4:50246105`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	D11,D7

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Predicted Protein Domains

This gene has no available Pfam domain hit in the current release.

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cDNA / CDS / Protein Sequences

Download genomic DNA (gene region only)

Every public gene has transcript sequence from the reference annotation. Protein-coding genes also have CDS and protein sequences. CDS and protein downloads do not apply to noncoding RNA. Version suffixes of original accessions are retained.

cDNA

6 records

Download cDNA FASTA

XR_009100645.1
AATATTGCATTGGGGTATAAGTTACCAAACACAATATTTCCACTACATTTTTACAAAATTATTATTGATACTATAACAAGGTTATTTTACTGTAACGTCTAATAATTTATGAAGAAAGTAAAATAAAATATAGTAATACGTACTTTTGCATAAATTTATGTATTCCCTCTCTCCAAAAAGGGGATGTCTGAAAAATTACCGAGAAGCAAAGCGGCAAGATTGAAGGCCAAAATCCAAACAACGCAGCGATCCGAGTTGCT...

XR_009100644.1
ATATTGCATTGGGGTATAAGTTACCAAACACAATATTTCCACTACATTTTTACAAAATTATTATTGATACTATAACAAGGTTATTTTACTGTAACGTCTAATAATTTATGAAGAAAGTAAAATAAAATATAGTAATACGTACTTTTGCATAAATTTATGTATTCCCTCTCTCCAAAAAGGGGATGTCTGAAAAATTACCGAGAAGCAAAGCGGCAAGATTGAAGGCCAAAATCCAAACAACGCAGCGGTAAATAAGCTCT...

CDS

2 records

Download CDS FASTA

LOC131020264
ATGAGCCGGTCGCCATCATTTTCTGTGAAGTCGGAGCCTGTATCAGAAATTGATGAAAAATCTTTGCAGCAATGGGTGGCTGCATTTTGCATCATCAGGTTTGATCTTGAGCAGGGTCAACTTATTGAAGAGTGTTATCCTCCTGGCTGTCTTACCCAAGGTGAGGAGCTTGAAGTCTCTTTTAATTCTTTCCCGGATTCAGTTTCACAGCATCATAATCGCTCAAGCATCCATGATTGTATATTCTTTTTCCGCGCAAA...

Protein

2 records

Download Protein FASTA

XP_057804954.1
MSRSPSFSVKSEPVSEIDEKSLQQWVAAFCIIRFDLEQGQLIEECYPPGCLTQGEELEVSFNSFPDSVSQHHNRSSIHDCIFFFRAKREKNLQASSVASTEIVEVVDNKISSQKPIGKNHISYNSRFLYGFVFNRQRHDERLKRGGEQKSVVILSYSPYTSVFRPLLQIMGPLYFDIGSKALNYIAAYVSKWPTPVPGQQMELPIGNASLKVNLPPSHCLPSNSGLFEDSASSLAPLLPSNLSVPQGLFHDSDLFGTFRG...

XP_057804956.1
MSRSPSFSVKSEPVSEIDEKSLQQWVAAFCIIRFDLEQGQLIEECYPPGCLTQGEELEVSFNSFPDSVSQHHNRSSIHDCIFFFRAKREKNLQASSVASTEIVEVVDNKISSQKPIGKNHISYNSRFLYGFVFNRQRHDERLKRGGEQKSVVILSYSPYTSVFRPLLQIMGPLYFDIGSKALNYIAAYVSKWPTPVPGQQMELPIGNASLKVNLPPSHCLPSNSGLFEDSASSLAPLLPSNLSVPQGLFHDSDLFGTFRG...

Flanking Sequence Downloads

Upstream/downstream length is capped at 10000 bp. Negative-strand genes are reverse-complemented so the exported FASTA follows transcriptional 5′ to 3′ orientation.

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