当前解析结果
SmilChr04G003369| 统一新 Gene ID | SmilChr04G003369 |
|---|---|
| 名称 | SmilChr04G003369 |
| 描述 | uncharacterized SmilChr04G003369 |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 50259961 - 50267470 / - |
| NCBI Gene ID | LOC131020266 |
|---|---|
| GeneID | 131020266 |
| locus_tag | - |
| NCBI Name | LOC131020266 |
| 原始查询 | SmilChr04G003369 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | alpha/beta-Hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:843729]; symbol=AT1G73920; hit=AT1G73920; species=arabidopsis; confidence=high |
| 产物 | alpha/beta-Hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:843729]; symbol=AT1G73920; hit=AT1G73920; species=arabidopsis; confidence=high |
| Arabidopsis | AT1G73920 (AT1G73920)alpha/beta-Hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:843729] identity=67.5; qcov=1; evalue=0; confidence=high |
| Rice | Os01g0521400- identity=72.5; qcov=0.613; evalue=0; confidence=high |
| GO | GO:0006629 (lipid metabolic process) |
| KEGG | - |
| Pfam | PF04083 (Abhydro_lipase) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131020266 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Mitochondrion | 线粒体 | 0.40000 | XP_057804958.1 |
| 2 | Nucleus membrane | 核膜 | 0.20000 | XP_057804958.1 |
| 3 | Endoplasmic reticulum | 内质网 | 0.20000 | XP_057804958.1 |
| 4 | Endoplasmic reticulum membrane | 内质网膜 | 0.20000 | XP_057804958.1 |
| 5 | Chloroplast membrane | 叶绿体膜 | 0.20000 | XP_057804958.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:50260341 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B46 |
Chr4:50260366 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B73 |
Chr4:50260403 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B2,B27,C37 |
Chr4:50260610 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B137,B28,B30,C49 |
Chr4:50260781 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B108,B9,C15,C51,C77 |
Chr4:50260949 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B46 |
Chr4:50261006 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr4:50261108 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr4:50261111 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B46 |
Chr4:50261162 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C75 |
Chr4:50264208 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B108 |
Chr4:50264351 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B82 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057804958.1PF04083
Abhydro_lipase 288-342 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057804958.1 |
Pfam | PF04083 |
Abhydro_lipase | Family | 288 | 342 | 8.3e-16 | 58.0 | Partial alpha/beta-hydrolase lipase region |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。