当前解析结果
SmilChr04G003370| 统一新 Gene ID | SmilChr04G003370 |
|---|---|
| 名称 | SmilChr04G003370 |
| 描述 | protein ASPARTIC PROTEASE IN GUARD CELL 1-like |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 50269132 - 50270825 / + |
| NCBI Gene ID | LOC131020267 |
|---|---|
| GeneID | 131020267 |
| locus_tag | - |
| NCBI Name | LOC131020267 |
| 原始查询 | SmilChr04G003370 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | protein ASPARTIC PROTEASE IN GUARD CELL 1-like |
| 产物 | protein ASPARTIC PROTEASE IN GUARD CELL 1-like |
| Arabidopsis | AT1G25510 (AT1G25510)Eukaryotic aspartyl protease family protein [Source:NCBI gene (formerly Entrezgene);Acc:839137] identity=52.1; qcov=0.993; evalue=1.26e-146; confidence=high |
| Rice | Os01g0140100- identity=49.6; qcov=0.936; evalue=2.45e-128; confidence=high |
| GO | GO:0004190 (aspartic-type endopeptidase activity); GO:0006508 (proteolysis) |
| KEGG | - |
| Pfam | PF00026 (Asp); PF14541 (TAXi_C); PF14543 (TAXi_N) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131020267 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Secreted | 分泌到胞外 | 1.00000 | XP_057804959.1 |
| 2 | Cell wall | 细胞壁 | 0.20000 | XP_057804959.1 |
| 3 | Vacuole | 液泡 | 0.20000 | XP_057804959.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057804959.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057804959.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:50269266 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C73 |
Chr4:50269287 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B69,C3 |
Chr4:50269323 |
A |
AC |
1bp_insertion | frameshift_variant | 9 | A19,B114,B136,B25,B41,B84,B90,C13,D6 |
Chr4:50269335 |
CA |
C |
1bp_deletion | frameshift_variant | 7 | A19,B114,B136,B25,B41,B84,D6 |
Chr4:50269351 |
ACT |
A |
2bp_deletion | frameshift_variant | 1 | B86 |
Chr4:50269351 |
ACT |
A |
2bp_deletion | CDS_variant | 1 | B86 |
Chr4:50269433 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B14,C28 |
Chr4:50269637 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B2,B27,C37 |
Chr4:50269638 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr4:50269708 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C2 |
Chr4:50269749 |
CT |
C |
1bp_deletion | frameshift_variant | 36 | A1,A2,B103,B105,B108,B109,B113,B123,B125,B129,B140,B28,B31,B36,B47,B48,B58,B66,B67,B77,B81,B84,C23,C24,C27,C31,C33,C35,C49,C52,C56,C58,C68,C71,C9,D6 |
Chr4:50269928 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B134,B87 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057804959.1PF00026
Asp 117-169 aa
PF14543
TAXi_N 118-277 aa
PF00026
Asp 194-450 aa
PF14541
TAXi_C 301-450 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057804959.1 |
Pfam | PF00026 |
Asp | Domain | 117 | 169 | 3.7e-18 | 66.8 | Eukaryotic aspartyl protease |
XP_057804959.1 |
Pfam | PF14543 |
TAXi_N | Domain | 118 | 277 | 2.7e-46 | 158.7 | Xylanase inhibitor N-terminal |
XP_057804959.1 |
Pfam | PF00026 |
Asp | Domain | 194 | 450 | 3.7e-18 | 66.8 | Eukaryotic aspartyl protease |
XP_057804959.1 |
Pfam | PF14541 |
TAXi_C | Domain | 301 | 450 | 2.1e-33 | 116.2 | Xylanase inhibitor C-terminal |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。