当前解析结果
SmilChr04G003393| 统一新 Gene ID | SmilChr04G003393 |
|---|---|
| 名称 | SmilChr04G003393 |
| 描述 | agmatine deiminase |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 50471863 - 50476412 / - |
| NCBI Gene ID | LOC131020297 |
|---|---|
| GeneID | 131020297 |
| locus_tag | - |
| NCBI Name | LOC131020297 |
| 原始查询 | SmilChr04G003393 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | agmatine deiminase |
| 产物 | agmatine deiminase |
| Arabidopsis | AT5G08170 (EMB1873)porphyromonas-type peptidyl-arginine deiminase family protein [Source:NCBI gene (formerly Entrezgene);Acc:830713] identity=69.7; qcov=0.961; evalue=0; confidence=high |
| Rice | Os04g0466600 (OsAIH)- identity=62.2; qcov=0.977; evalue=1.55e-177; confidence=high |
| GO | GO:0004668 (protein-arginine deiminase activity); GO:0009446 (putrescine biosynthetic process); GO:0047632 (agmatine deiminase activity) |
| KEGG | smil00330 (Arginine and proline metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF04371 (PAD_porph) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131020297 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 1.00000 | XP_057805008.1 |
| 2 | Cytoplasm | 细胞质 | 0.80000 | XP_057805008.1 |
| 3 | Nucleus | 细胞核 | 0.20000 | XP_057805008.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057805008.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057805008.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:50472062 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B104,C50 |
Chr4:50473090 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C86 |
Chr4:50473183 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B108,B9,C15,C51,C77 |
Chr4:50473225 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C50 |
Chr4:50473259 |
AC |
A |
1bp_deletion | frameshift_variant | 2 | B39,D7 |
Chr4:50473259 |
AC |
A |
1bp_deletion | CDS_variant | 2 | B39,D7 |
Chr4:50473260 |
CT |
C |
1bp_deletion | CDS_variant | 4 | B121,B22,B82,D2 |
Chr4:50473283 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | C24,C50,C78,C85,D7 |
Chr4:50473793 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C50 |
Chr4:50473864 |
TA |
T |
1bp_deletion | frameshift_variant | 98 | A10,A13,A23,A25,A5,A6,A7,A8,A9,B1,B102,B104,B106,B107,B11,B111,B113,B114,B119,B12,B120,B121,B125,B126,B128,B129,B130,B131,B132,B133,B134,B137,B138,B18,B22,B24,B28,B29,B30,B31,B35,B4,B45,B46,B5,B53,B55,B56,B60,B65,B66,B75,B77,B78,B79,B8,B81,B82,B86,B89,B91,B96,B97,B98,C18,C20,C21,C23,C26,C35,C36,C37,C4,C47,C48,C49,C5,C55,C59,C6,C60,C61,C63,C64,C66,C70,C72,C76,C80,C81,C83,C85,C87,C9,D11,D2,D8,D9 |
Chr4:50473872 |
A |
AT |
1bp_insertion | frameshift_variant | 98 | A10,A13,A23,A25,A5,A6,A7,A8,A9,B1,B102,B104,B106,B107,B11,B111,B113,B114,B119,B12,B120,B121,B125,B126,B128,B129,B130,B131,B132,B133,B134,B137,B138,B18,B22,B24,B28,B29,B30,B31,B35,B4,B45,B46,B5,B53,B55,B56,B60,B65,B66,B75,B77,B78,B79,B8,B81,B82,B86,B89,B91,B96,B97,B98,C18,C20,C21,C23,C26,C35,C36,C37,C4,C47,C48,C49,C5,C55,C59,C6,C60,C61,C63,C64,C66,C70,C72,C76,C80,C81,C83,C85,C87,C9,D11,D2,D8,D9 |
Chr4:50474457 |
AG |
A |
1bp_deletion | frameshift_variant | 10 | B104,B108,B9,C15,C24,C50,C51,C77,C78,D7 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057805008.1PF04371
PAD_porph 25-382 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057805008.1 |
Pfam | PF04371 |
PAD_porph | Family | 25 | 382 | 7.5e-124 | 413.9 | Porphyromonas-type peptidyl-arginine deiminase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。