Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G003414`

染色体: Chr04 坐标: 50756986-50759548 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G003414`
名称	SmilChr04G003414
描述	uncharacterized SmilChr04G003414
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	50756986 - 50759548 / `+`

ID 对照

NCBI Gene ID	`LOC131020293`
GeneID	`131020293`
locus_tag	`-`
NCBI Name	`LOC131020293`
原始查询	`SmilChr04G003414`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	F-box and associated interaction domains-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:826869]; symbol=CPR1; hit=AT4G12560; species=arabidopsis; confidence=low
产物	F-box and associated interaction domains-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:826869]; symbol=CPR1; hit=AT4G12560; species=arabidopsis; confidence=low
Arabidopsis	`AT4G12560` (CPR1) F-box and associated interaction domains-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:826869] identity=25.4; qcov=0.627; evalue=4.43e-08; confidence=low
Rice	`-` -
GO	-
KEGG	-
Pfam	PF07734 (FBA_1); PF08268 (FBA_3)
InterPro	-
eggNOG	-
NR	GeneID:131020293

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057805002.1`
2	Cytoplasm	细胞质	0.20000	`XP_057805002.1`
3	Cytosol	细胞质基质	0.20000	`XP_057805002.1`
4	Chromosome	染色体	0.00000	`XP_057805002.1`
5	Centromere	着丝粒	0.00000	`XP_057805002.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:50757127`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr4:50757182`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C64
`Chr4:50757611`	`AC`	`A`	1bp_deletion	frameshift_variant	2	B104,B121
`Chr4:50757611`	`AC`	`A`	1bp_deletion	CDS_variant	2	B104,B121
`Chr4:50757613`	`ATT`	`A`	2bp_deletion	frameshift_variant	2	B104,B121
`Chr4:50757613`	`ATT`	`A`	2bp_deletion	CDS_variant	2	B104,B121
`Chr4:50757747`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B4,C5,D2
`Chr4:50757787`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B4,C5,D2
`Chr4:50757836`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A23,B99,C8
`Chr4:50757856`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B125,B90,C87
`Chr4:50757936`	`T`	`TA`	1bp_insertion	frameshift_variant	40	A10,A3,A4,A9,B104,B105,B139,B31,B38,B39,B53,B61,B66,B7,B78,B85,B87,B95,C10,C14,C2,C24,C29,C30,C34,C36,C41,C43,C45,C46,C47,C5,C50,C53,C6,C60,C7,C79,D4,D9
`Chr4:50758057`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B41

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057805002.1

445 aa

222

445

FBA_3

FBA_1

PF08268 FBA_3 108-347 aa PF07734 FBA_1 144-308 aa

XP_057805003.1

445 aa

222

445

FBA_3

FBA_1

PF08268 FBA_3 108-347 aa PF07734 FBA_1 144-308 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057805002.1`	Pfam	`PF08268`	FBA_3	Repeat	108	347	2.2e-18	67.1	F-box associated beta propeller domain
`XP_057805002.1`	Pfam	`PF07734`	FBA_1	Repeat	144	308	1.6e-14	54.3	F-box associated beta propeller domain
`XP_057805003.1`	Pfam	`PF08268`	FBA_3	Repeat	108	347	2.2e-18	67.1	F-box associated beta propeller domain
`XP_057805003.1`	Pfam	`PF07734`	FBA_1	Repeat	144	308	1.6e-14	54.3	F-box associated beta propeller domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057949020.1
AATTTTTGAAGTCAAGCGAAATATGCGAAAACCGGGAAAATATAGGAATTTTGACGCTATTTGCCCTTTAATTTATTATAGTGGTTTCCAGTCACTGTGTTCAACTCTCCTCTTCTCAGATACCGCATGGCTGCACGCTTCGCCACCTCCGCTGCCAAGCGCTGCCTTCCGATGCTTCCTTCTCTCTATGGCCAACGTGTTCGATCTAGCAATTGCTTCTGGGGCCCCAGAATCGGAACCCTAATTCAACAGACTAGCAG...

XM_057949019.1
TGCCCTTTAATTTATTATAGTGGTTTCCAGTCACTGTGTTCAACTCTCCTCTTCTCAGATACCGCATGGCTGCACGCTTCGCCACCTCCGCTGCCAAGCGCTGCCTTCCGATGCTTCCTTCTCTCTATGGCCAACGTGTTCGATCTAGCAATTGCTTCTGGGGCCCCAGAATCGGAACCCTAATTCAACAGACTAGCAGAGAGTGGGAAAGTAGGAAGGTGGGTCCGACGAGAATCTACGGTGCTGCGCCTACTTGGAAA...

CDS

2 records

下载 CDS FASTA

LOC131020293
ATGGCTGCACGCTTCGCCACCTCCGCTGCCAAGCGCTGCCTTCCGATGCTTCCTTCTCTCTATGGCCAACGTGTTCGATCTAGCAATTGCTTCTGGGGCCCCAGAATCGGAACCCTAATTCAACAGACTAGCAGAGAGTGGGAAAGTAGGAAGGTGGGTCCGACGAGAATCTACGGTGCTGCGCCTACTTGGAAAAAGCTTGTGCCGCTAGGTAATGAGGCAATTGTTCCCTGCATATCCGAGACAAAACATATGTCTTC...

Protein

2 records

下载 Protein FASTA

XP_057805002.1
MAARFATSAAKRCLPMLPSLYGQRVRSSNCFWGPRIGTLIQQTSREWESRKVGPTRIYGAAPTWKKLVPLGNEAIVPCISETKHMSSNGLSDHMFPNSKPVPYIYILCADEHEYMYFSAHSVEEDGTISSSPKYYVYPPSPLKETCYFTAVSCNGLLHFENLQHDDFLWNPTTNEFKALPDSSFDHQHPHGIVVTNLKLGCVMWSDNRCADNFKMLQLVLANTADVEDESSIDLSYHIHLYSLKTNSWKKIPCSEFFYLQ...

XP_057805003.1
MAARFATSAAKRCLPMLPSLYGQRVRSSNCFWGPRIGTLIQQTSREWESRKVGPTRIYGAAPTWKKLVPLGNEAIVPCISETKHMSSNGLSDHMFPNSKPVPYIYILCADEHEYMYFSAHSVEEDGTISSSPKYYVYPPSPLKETCYFTAVSCNGLLHFENLQHDDFLWNPTTNEFKALPDSSFDHQHPHGIVVTNLKLGCVMWSDNRCADNFKMLQLVLANTADVEDESSIDLSYHIHLYSLKTNSWKKIPCSEFFYLQ...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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