当前解析结果
SmilChr04G003423| 统一新 Gene ID | SmilChr04G003423 |
|---|---|
| 名称 | SmilChr04G003423 |
| 描述 | 65-kDa microtubule-associated protein 2-like |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 50817578 - 50820576 / - |
| NCBI Gene ID | LOC131020311 |
|---|---|
| GeneID | 131020311 |
| locus_tag | - |
| NCBI Name | LOC131020311 |
| 原始查询 | SmilChr04G003423 |
| 来源 | GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog |
|---|---|
| 描述 | 65-kDa microtubule-associated protein 2-like |
| 产物 | 65-kDa microtubule-associated protein 2-like |
| Arabidopsis | AT4G26760 (MAP65-2)microtubule-associated protein 65-2 [Source:NCBI gene (formerly Entrezgene);Acc:828783] identity=40.2; qcov=0.667; evalue=3.61e-13; confidence=low |
| Rice | Os01g0685900 (P0478H03.31-1)- identity=47.1; qcov=0.553; evalue=8.75e-15; confidence=low |
| GO | GO:0000226 (microtubule cytoskeleton organization); GO:0005737 (cytoplasm); GO:0005819 (spindle); GO:0008017 (microtubule binding) |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131020311 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.80000 | XP_057805029.1 |
| 2 | Nucleus | 细胞核 | 0.60000 | XP_057805029.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057805029.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057805029.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057805029.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:50818196 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A10,A8,B53,C39 |
Chr4:50818242 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B2,B99,C12,C51,C74 |
Chr4:50818248 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A5,B17,C57,D9 |
Chr4:50818253 |
G |
A |
EMS_canonical_SNV | stop_gained | 30 | A10,A13,A6,A7,B122,B135,B137,B15,B16,B27,B3,B45,B53,B65,B67,B81,B84,B97,C10,C16,C24,C42,C44,C54,C71,C77,C80,C81,C86,D5 |
Chr4:50818262 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A13 |
Chr4:50818267 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B2 |
Chr4:50819383 |
G |
A |
EMS_canonical_SNV | stop_gained | 1 | C11 |
Chr4:50819383 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C11 |
Chr4:50819471 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C71 |
Chr4:50819473 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B72 |
Chr4:50819477 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B1,B131,C12 |
Chr4:50819478 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B131,B70,C80,D10 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
11 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。