当前解析结果
SmilChr04G003436| 统一新 Gene ID | SmilChr04G003436 |
|---|---|
| 名称 | SmilChr04G003436 |
| 描述 | S-adenosylmethionine carrier 1, chloroplastic/mitochondrial |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 50912520 - 50916019 / + |
| NCBI Gene ID | LOC131020330 |
|---|---|
| GeneID | 131020330 |
| locus_tag | - |
| NCBI Name | LOC131020330 |
| 原始查询 | SmilChr04G003436 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | S-adenosylmethionine carrier 1, chloroplastic/mitochondrial |
| 产物 | S-adenosylmethionine carrier 1%2C chloroplastic/mitochondrial |
| Arabidopsis | AT1G74240 (AT1G74240)Mitochondrial substrate carrier family protein [Source:NCBI gene (formerly Entrezgene);Acc:843764] identity=67.6; qcov=0.955; evalue=4.06e-157; confidence=high |
| Rice | Os03g0213800- identity=68.3; qcov=0.969; evalue=1.63e-167; confidence=high |
| GO | - |
| KEGG | - |
| Pfam | PF00153 (Mito_carr) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131020330 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Mitochondrion | 线粒体 | 1.00000 | XP_057805050.1 |
| 2 | Mitochondrion membrane | 线粒体膜 | 1.00000 | XP_057805050.1 |
| 3 | Mitochondrion inner membrane | 线粒体内膜 | 1.00000 | XP_057805050.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057805050.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057805050.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:50912834 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C80 |
Chr4:50913260 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A3,B46,B70,D11 |
Chr4:50913376 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B4,B91,C5,D2,D4 |
Chr4:50913604 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B48,B60 |
Chr4:50915057 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B121,D11 |
Chr4:50915079 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C80 |
Chr4:50915194 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr4:50915219 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B121,D11 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057805050.1PF00153
Mito_carr 26-117 aa
PF00153
Mito_carr 125-230 aa
PF00153
Mito_carr 247-332 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057805050.1 |
Pfam | PF00153 |
Mito_carr | Repeat | 26 | 117 | 9.3e-67 | 221.5 | Mitochondrial carrier protein |
XP_057805050.1 |
Pfam | PF00153 |
Mito_carr | Repeat | 125 | 230 | 9.3e-67 | 221.5 | Mitochondrial carrier protein |
XP_057805050.1 |
Pfam | PF00153 |
Mito_carr | Repeat | 247 | 332 | 9.3e-67 | 221.5 | Mitochondrial carrier protein |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。