当前解析结果
SmilChr04G003451| 统一新 Gene ID | SmilChr04G003451 |
|---|---|
| 名称 | SmilChr04G003451 |
| 描述 | uncharacterized SmilChr04G003451 |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 51002929 - 51005000 / + |
| NCBI Gene ID | LOC131020345 |
|---|---|
| GeneID | 131020345 |
| locus_tag | - |
| NCBI Name | LOC131020345 |
| 原始查询 | SmilChr04G003451 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | TTF-type zinc finger protein with HAT dimerization domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:826611]; symbol=AT4G10200; hit=AT4G10200; species=arabidopsis; confidence=high |
| 产物 | TTF-type zinc finger protein with HAT dimerization domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:826611]; symbol=AT4G10200; hit=AT4G10200; species=arabidopsis; confidence=high |
| Arabidopsis | AT4G10200 (AT4G10200)TTF-type zinc finger protein with HAT dimerization domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:826611] identity=47; qcov=0.715; evalue=1.75e-115; confidence=high |
| Rice | Os09g0290900- identity=38.5; qcov=0.183; evalue=4.72e-17; confidence=weak |
| GO | GO:0046983 (protein dimerization activity) |
| KEGG | - |
| Pfam | PF05699 (Dimer_Tnp_hAT); PF14291 (DUF4371); PF27073 (FAM200-ZBED5_RNase-like) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131020345 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057805079.1 |
| 2 | Cytoplasm | 细胞质 | 0.60000 | XP_057805079.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057805079.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057805079.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057805079.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:51003243 |
G |
GA |
1bp_insertion | frameshift_variant | 9 | A14,B110,B121,B23,B28,B40,B52,B98,C16 |
Chr4:51003248 |
GA |
G |
1bp_deletion | frameshift_variant | 55 | A15,A22,A25,A7,B104,B109,B11,B111,B112,B113,B114,B122,B123,B124,B129,B13,B138,B16,B34,B35,B42,B43,B46,B47,B49,B64,B68,B71,B74,B8,B81,B84,B88,B91,B95,B99,C10,C13,C21,C26,C4,C41,C43,C61,C64,C72,C73,C74,C75,C86,D10,D2,D5,D6,D7 |
Chr4:51003255 |
G |
GA |
1bp_insertion | frameshift_variant | 33 | A14,A18,A2,A24,B105,B108,B110,B114,B121,B129,B19,B20,B23,B28,B29,B31,B40,B41,B46,B52,B56,B74,B78,B8,B84,B96,B97,B98,C16,C31,C52,C62,C77 |
Chr4:51003264 |
G |
GA |
1bp_insertion | frameshift_variant | 5 | B104,B113,B49,C10,D10 |
Chr4:51003264 |
G |
GA |
1bp_insertion | CDS_variant | 5 | B104,B113,B49,C10,D10 |
Chr4:51003286 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B111,C74 |
Chr4:51003296 |
C |
T |
EMS_canonical_SNV | stop_gained | 11 | B100,B105,B133,B5,B56,B64,B68,B87,C23,C31,C5 |
Chr4:51003377 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B119,B95,C65 |
Chr4:51003504 |
TC |
T |
1bp_deletion | frameshift_variant | 1 | B117 |
Chr4:51003504 |
TC |
T |
1bp_deletion | CDS_variant | 1 | B117 |
Chr4:51003550 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B27 |
Chr4:51003568 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B13 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057805079.1PF14291
DUF4371 183-422 aa
PF27073
FAM200-ZBED5_RNase-like 307-426 aa
PF05699
Dimer_Tnp_hAT 484-544 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057805079.1 |
Pfam | PF14291 |
DUF4371 | Domain | 183 | 422 | 4.7e-41 | 141.6 | ZMYM1/FAM200, RNase-like domain |
XP_057805079.1 |
Pfam | PF27073 |
FAM200-ZBED5_RNase-like | Domain | 307 | 426 | 2.6e-12 | 47.5 | FAM200/ZBED5 RNase-like |
XP_057805079.1 |
Pfam | PF05699 |
Dimer_Tnp_hAT | Domain | 484 | 544 | 1.6e-16 | 60.6 | hAT family C-terminal dimerisation region |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。