Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G003473`

染色体: Chr04 坐标: 51186891-51189681 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G003473`
名称	SmilChr04G003473
描述	flavin-containing monooxygenase FMO GS-OX-like 9
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	51186891 - 51189681 / `+`

ID 对照

NCBI Gene ID	`LOC131020365`
GeneID	`131020365`
locus_tag	`-`
NCBI Name	`LOC131020365`
原始查询	`SmilChr04G003473`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	flavin-containing monooxygenase FMO GS-OX-like 9
产物	flavin-containing monooxygenase FMO GS-OX-like 9
Arabidopsis	`AT5G07800` (AT5G07800) Flavin-binding monooxygenase family protein [Source:NCBI gene (formerly Entrezgene);Acc:830673] identity=69.6; qcov=0.996; evalue=0; confidence=high
Rice	`Os07g0112000` - identity=53.3; qcov=1.02; evalue=1.36e-173; confidence=high
GO	GO:0004499 (N,N-dimethylaniline monooxygenase activity); GO:0050660 (flavin adenine dinucleotide binding); GO:0050661 (NADP binding)
KEGG	-
Pfam	PF00743 (FMO-like); PF00890 (FAD_binding_2); PF01266 (DAO); PF01494 (FAD_binding_3); PF01593 (Amino_oxidase); PF07992 (Pyr_redox_2); PF12831 (FAD_oxidored); PF13434 (Lys_Orn_oxgnase); PF13450 (NAD_binding_8); PF13738 (Pyr_redox_3)
InterPro	-
eggNOG	-
NR	GeneID:131020365

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057805114.1`
2	Cytoplasm	细胞质	1.00000	`XP_057805115.1`
3	Nucleus	细胞核	0.00000	`XP_057805114.1`
4	Chromosome	染色体	0.00000	`XP_057805114.1`
5	Centromere	着丝粒	0.00000	`XP_057805114.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:51186954`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B48
`Chr4:51186990`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B108,D10
`Chr4:51187068`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C10
`Chr4:51187573`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C73
`Chr4:51188011`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B130,B59,B63,C12,C53
`Chr4:51188134`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B78,B79
`Chr4:51188920`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B46
`Chr4:51188952`	`T`	`TAA`	2bp_insertion	frameshift_variant	31	A18,A25,A4,A5,A9,B105,B126,B129,B140,B36,B37,B48,B55,B75,B78,B81,C10,C18,C19,C26,C30,C31,C35,C45,C46,C50,C53,C55,C64,C66,C74
`Chr4:51188970`	`TAA`	`T`	2bp_deletion	frameshift_variant	31	A18,A25,A4,A5,A9,B105,B126,B129,B140,B36,B37,B48,B55,B75,B78,B81,C10,C18,C19,C26,C30,C31,C35,C45,C46,C50,C53,C55,C64,C66,C74
`Chr4:51188993`	`A`	`AC`	1bp_insertion	frameshift_variant	32	A18,A25,A4,A5,A9,B105,B126,B129,B140,B36,B37,B48,B55,B75,B78,B81,B89,C10,C18,C19,C26,C30,C31,C35,C45,C46,C50,C53,C55,C64,C66,C74
`Chr4:51189017`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B114,B20,C8
`Chr4:51189072`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B114,B20,C8

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057805114.1

517 aa

258

517

FMO-like

Pyr_redox_2

FAD_binding_3

DAO

FAD_binding_2

FAD_oxidored

NAD_binding_8

Amino_oxidase

Pyr_redox_3

Lys_Orn_oxgnase

FMO-like

PF00743 FMO-like 9-237 aa PF07992 Pyr_redox_2 9-299 aa PF01494 FAD_binding_3 10-41 aa PF01266 DAO 10-45 aa PF00890 FAD_binding_2 11-46 aa PF12831 FAD_oxidored 11-47 aa PF13450 NAD_binding_8 13-47 aa PF01593 Amino_oxidase 19-45 aa PF13738 Pyr_redox_3 70-309 aa PF13434 Lys_Orn_oxgnase 121-230 aa PF00743 FMO-like 253-372 aa

XP_057805115.1

456 aa

228

456

FMO-like

Pyr_redox_2

FAD_binding_3

DAO

FAD_binding_2

FAD_oxidored

NAD_binding_8

Amino_oxidase

Pyr_redox_3

Lys_Orn_oxgnase

FMO-like

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057805114.1`	Pfam	`PF00743`	FMO-like	Family	9	237	3.4e-54	184.9	Flavin-binding monooxygenase-like
`XP_057805114.1`	Pfam	`PF07992`	Pyr_redox_2	Domain	9	299	4.9e-22	79.4	Pyridine nucleotide-disulphide oxidoreductase
`XP_057805114.1`	Pfam	`PF01494`	FAD_binding_3	Domain	10	41	3.8e-07	30.4	FAD binding domain
`XP_057805114.1`	Pfam	`PF01266`	DAO	Domain	10	45	4.1e-12	47.0	FAD dependent oxidoreductase
`XP_057805114.1`	Pfam	`PF00890`	FAD_binding_2	Domain	11	46	4.8e-07	30.0	FAD binding domain
`XP_057805114.1`	Pfam	`PF12831`	FAD_oxidored	Family	11	47	1.9e-06	28.2	FAD dependent oxidoreductase
`XP_057805114.1`	Pfam	`PF13450`	NAD_binding_8	Domain	13	47	1.3e-10	42.2	NAD(P)-binding Rossmann-like domain
`XP_057805114.1`	Pfam	`PF01593`	Amino_oxidase	Domain	19	45	2.5e-05	24.5	Flavin containing amine oxidoreductase
`XP_057805114.1`	Pfam	`PF13738`	Pyr_redox_3	Family	70	309	9.5e-24	84.9	Pyridine nucleotide-disulphide oxidoreductase
`XP_057805114.1`	Pfam	`PF13434`	Lys_Orn_oxgnase	Family	121	230	5.8e-06	26.4	L-lysine 6-monooxygenase/L-ornithine 5-monooxygenase
`XP_057805114.1`	Pfam	`PF00743`	FMO-like	Family	253	372	3.4e-54	184.9	Flavin-binding monooxygenase-like
`XP_057805115.1`	Pfam	`PF00743`	FMO-like	Family	9	237	5.2e-55	187.6	Flavin-binding monooxygenase-like
`XP_057805115.1`	Pfam	`PF07992`	Pyr_redox_2	Domain	9	299	3.4e-22	79.9	Pyridine nucleotide-disulphide oxidoreductase
`XP_057805115.1`	Pfam	`PF01494`	FAD_binding_3	Domain	10	41	6.2e-07	29.7	FAD binding domain
`XP_057805115.1`	Pfam	`PF01266`	DAO	Domain	10	45	3e-12	47.5	FAD dependent oxidoreductase
`XP_057805115.1`	Pfam	`PF00890`	FAD_binding_2	Domain	11	46	3.7e-07	30.4	FAD binding domain
`XP_057805115.1`	Pfam	`PF12831`	FAD_oxidored	Family	11	47	1.6e-06	28.5	FAD dependent oxidoreductase
`XP_057805115.1`	Pfam	`PF13450`	NAD_binding_8	Domain	13	47	1e-10	42.4	NAD(P)-binding Rossmann-like domain
`XP_057805115.1`	Pfam	`PF01593`	Amino_oxidase	Domain	19	45	1.9e-05	24.9	Flavin containing amine oxidoreductase
`XP_057805115.1`	Pfam	`PF13738`	Pyr_redox_3	Family	70	309	5.6e-24	85.7	Pyridine nucleotide-disulphide oxidoreductase
`XP_057805115.1`	Pfam	`PF13434`	Lys_Orn_oxgnase	Family	121	230	3.8e-06	27.0	L-lysine 6-monooxygenase/L-ornithine 5-monooxygenase
`XP_057805115.1`	Pfam	`PF00743`	FMO-like	Family	253	399	5.2e-55	187.6	Flavin-binding monooxygenase-like

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057949131.1
ATGGTTTCCGAAAGGAACTTGTCCAAGAAAGTGTGCGTGATCGGAGCTGGACCGGCCGGTCTGGTCGCAGCCCGGGAGCTGAGGAGAGAGGGCCATGAAGTGGTGGTTATTGAACAAAAGCATGATGTTGGAGGGCAATGGCTATATGACTCTAAAGTCGAGGAAGAAAACCCTCTGGGAAAAAACCAGTTCTTGAAGGTTCATAGCAGCATCTACGCCTCGTTGAGGTTGATTTCGCCTAGAGAAATCATGGGGTTCAC...

XM_057949132.1
ATGGTTTCCGAAAGGAACTTGTCCAAGAAAGTGTGCGTGATCGGAGCTGGACCGGCCGGTCTGGTCGCAGCCCGGGAGCTGAGGAGAGAGGGCCATGAAGTGGTGGTTATTGAACAAAAGCATGATGTTGGAGGGCAATGGCTATATGACTCTAAAGTCGAGGAAGAAAACCCTCTGGGAAAAAACCAGTTCTTGAAGGTTCATAGCAGCATCTACGCCTCGTTGAGGTTGATTTCGCCTAGAGAAATCATGGGGTTCAC...

CDS

2 records

下载 CDS FASTA

LOC131020365
ATGGTTTCCGAAAGGAACTTGTCCAAGAAAGTGTGCGTGATCGGAGCTGGACCGGCCGGTCTGGTCGCAGCCCGGGAGCTGAGGAGAGAGGGCCATGAAGTGGTGGTTATTGAACAAAAGCATGATGTTGGAGGGCAATGGCTATATGACTCTAAAGTCGAGGAAGAAAACCCTCTGGGAAAAAACCAGTTCTTGAAGGTTCATAGCAGCATCTACGCCTCGTTGAGGTTGATTTCGCCTAGAGAAATCATGGGGTTCAC...

Protein

2 records

下载 Protein FASTA

XP_057805114.1
MVSERNLSKKVCVIGAGPAGLVAARELRREGHEVVVIEQKHDVGGQWLYDSKVEEENPLGKNQFLKVHSSIYASLRLISPREIMGFTDFPFGGKKGRDMRRFPGHNELLLYLQDFCDTFGLREYIRFNTRVENVEMLDYPVLDKEHLKWVVKSKAEKEVEEVYDAVVVATGHYSQPRLPAIKGMDAWRRKQMHSHIYRVPDPFKNEVVVVVGSSLSGQDISMELVNVANEIYLSSKSLDVSQGLSKVIAKYDNLHLRPQI...

XP_057805115.1
MVSERNLSKKVCVIGAGPAGLVAARELRREGHEVVVIEQKHDVGGQWLYDSKVEEENPLGKNQFLKVHSSIYASLRLISPREIMGFTDFPFGGKKGRDMRRFPGHNELLLYLQDFCDTFGLREYIRFNTRVENVEMLDYPVLDKEHLKWVVKSKAEKEVEEVYDAVVVATGHYSQPRLPAIKGMDAWRRKQMHSHIYRVPDPFKNEVVVVVGSSLSGQDISMELVNVANEIYLSSKSLDVSQGLSKVIAKYDNLHLRPQI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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