Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G003474`

染色体: Chr04 坐标: 51192356-51196430 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G003474`
名称	SmilChr04G003474
描述	probable LRR receptor-like serine/threonine-protein kinase At1g74360
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	51192356 - 51196430 / `-`

ID 对照

NCBI Gene ID	`LOC131020368`
GeneID	`131020368`
locus_tag	`-`
NCBI Name	`LOC131020368`
原始查询	`SmilChr04G003474`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable LRR receptor-like serine/threonine-protein kinase At1g74360
产物	probable LRR receptor-like serine/threonine-protein kinase At1g74360
Arabidopsis	`AT1G74360` (AT1G74360) Leucine-rich repeat protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:843777] identity=63; qcov=0.974; evalue=0; confidence=high
Rice	`Os07g0597200` - identity=51.9; qcov=1.02; evalue=0; confidence=high
GO	GO:0004672 (protein kinase activity); GO:0005515 (protein binding); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation)
KEGG	-
Pfam	PF00069 (Pkinase); PF00560 (LRR_1); PF07714 (PK_Tyr_Ser-Thr); PF08263 (LRRNT_2); PF13516 (LRR_6); PF13855 (LRR_8)
InterPro	-
eggNOG	-
NR	GeneID:131020368

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057805116.1`
2	Nucleus	细胞核	0.00000	`XP_057805116.1`
3	Chromosome	染色体	0.00000	`XP_057805116.1`
4	Centromere	着丝粒	0.00000	`XP_057805116.1`
5	Chromatin	染色质	0.00000	`XP_057805116.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:51192594`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B69
`Chr4:51192772`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B33
`Chr4:51192845`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B114,B20,B44
`Chr4:51192998`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B130,B59,B63,C12,C53
`Chr4:51193082`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B130,B59,B63,C12,C53
`Chr4:51193115`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A15,B91,C21
`Chr4:51193229`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C12,C27
`Chr4:51193265`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C53,D10
`Chr4:51193388`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B130,B59,B63,C12,C53
`Chr4:51193438`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr4:51193439`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B130,B59,B63,C53
`Chr4:51193568`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B114,B20,B44

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057805116.1

1094 aa

547

1094

LRRNT_2

LRR_1

LRR_6

LRR_1

LRR_6

LRR_1

LRR_8

LRR_1

Pkinase

PK_Tyr_Ser-Thr

PF08263 LRRNT_2 34-78 aa PF00560 LRR_1 108-129 aa PF13516 LRR_6 199-215 aa PF00560 LRR_1 202-223 aa PF13516 LRR_6 244-260 aa PF00560 LRR_1 247-269 aa PF00560 LRR_1 272-293 aa PF13855 LRR_8 272-330 aa PF00560 LRR_1 296-317 aa PF00560 LRR_1 319-341 aa PF00560 LRR_1 368-390 aa PF00560 LRR_1 392-414 aa PF00560 LRR_1 417-438 aa PF00560 LRR_1 440-462 aa PF00560 LRR_1 613-634 aa PF00560 LRR_1 637-658 aa PF00069 Pkinase 808-1075 aa PF07714 PK_Tyr_Ser-Thr 811-1013 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057805116.1`	Pfam	`PF08263`	LRRNT_2	Family	34	78	2.2e-05	25.3	Leucine rich repeat N-terminal domain
`XP_057805116.1`	Pfam	`PF00560`	LRR_1	Repeat	108	129	1e-48	153.4	Leucine Rich Repeat
`XP_057805116.1`	Pfam	`PF13516`	LRR_6	Repeat	199	215	5.2e-14	51.8	Leucine Rich repeat
`XP_057805116.1`	Pfam	`PF00560`	LRR_1	Repeat	202	223	1e-48	153.4	Leucine Rich Repeat
`XP_057805116.1`	Pfam	`PF13516`	LRR_6	Repeat	244	260	5.2e-14	51.8	Leucine Rich repeat
`XP_057805116.1`	Pfam	`PF00560`	LRR_1	Repeat	247	269	1e-48	153.4	Leucine Rich Repeat
`XP_057805116.1`	Pfam	`PF00560`	LRR_1	Repeat	272	293	1e-48	153.4	Leucine Rich Repeat
`XP_057805116.1`	Pfam	`PF13855`	LRR_8	Repeat	272	330	2.5e-42	143.2	Leucine rich repeat
`XP_057805116.1`	Pfam	`PF00560`	LRR_1	Repeat	296	317	1e-48	153.4	Leucine Rich Repeat
`XP_057805116.1`	Pfam	`PF00560`	LRR_1	Repeat	319	341	1e-48	153.4	Leucine Rich Repeat
`XP_057805116.1`	Pfam	`PF00560`	LRR_1	Repeat	368	390	1e-48	153.4	Leucine Rich Repeat
`XP_057805116.1`	Pfam	`PF00560`	LRR_1	Repeat	392	414	1e-48	153.4	Leucine Rich Repeat
`XP_057805116.1`	Pfam	`PF00560`	LRR_1	Repeat	417	438	1e-48	153.4	Leucine Rich Repeat
`XP_057805116.1`	Pfam	`PF00560`	LRR_1	Repeat	440	462	1e-48	153.4	Leucine Rich Repeat
`XP_057805116.1`	Pfam	`PF00560`	LRR_1	Repeat	613	634	1e-48	153.4	Leucine Rich Repeat
`XP_057805116.1`	Pfam	`PF00560`	LRR_1	Repeat	637	658	1e-48	153.4	Leucine Rich Repeat
`XP_057805116.1`	Pfam	`PF00069`	Pkinase	Domain	808	1075	4.2e-43	148.4	Protein kinase domain
`XP_057805116.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	811	1013	8.4e-39	134.1	Protein tyrosine and serine/threonine kinase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057949133.1
ACACGCACCAACAAGAAAACCAAACACTAAAACTACACACAACAATTCAATATCATTCATCCCATAATATTTAATAACGAAATCTGCTCATACAAAACAAAAGGATAGTGTGTGCTTCACATCAATATAATATTTGGCGTACGTGCATCTCTTCCAACTCTGCTCGCAGCTGCAGGCCCTCCTCCTATCCTATATTCAACAAAAAACATTTGACCGCAAATACGAAAACCTATTCCACATTTTTCCATTCTTTTCTTGTC...

CDS

1 records

下载 CDS FASTA

LOC131020368
ATGTCAGAAGACGAATCCGATCACCTCCTCCTTCGCGCCGCGTTTCTCTTCTTCTTCCTCCTCATCACAGGAGAGGTCGTGATTGGGCAATCGGTAGAGAGAGACAGAGACATCTTAATCCAGCTGCAGTCATTTCTGAAGAGAGAAAATCCGGTGGTGGAGAATAGAGGCAAATACACGAAATGGAACTTGGGCGACGGCTCCCCGTGCGCGTGGGAGGGAATCACGTGCGACAACTCGCCAGAACGCGTGACGGAGAT...

Protein

1 records

下载 Protein FASTA

XP_057805116.1
MSEDESDHLLLRAAFLFFFLLITGEVVIGQSVERDRDILIQLQSFLKRENPVVENRGKYTKWNLGDGSPCAWEGITCDNSPERVTEIDLSDCNMAGELFGNFSALTELSHLDLSSNTIGGAIPADLGRCRKLKFLNLSHNIITGEVNLTGLDNLEVLDLSQNRIQAYIRLTIPENCTNLAVANISNNNFTGEVGDIFVNCRNLKFLDLSSNRLEGDIWSGFDRMVEVSLSENRFSGDIASIFSQNCSLRSLDLSENHFRG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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