Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G003482`

染色体: Chr04 坐标: 51269881-51274182 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G003482`
名称	SmilChr04G003482
描述	protein IMPAIRED IN BABA-INDUCED STERILITY 1-like
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	51269881 - 51274182 / `+`

ID 对照

NCBI Gene ID	`LOC131020374`
GeneID	`131020374`
locus_tag	`-`
NCBI Name	`LOC131020374`
原始查询	`SmilChr04G003482`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein IMPAIRED IN BABA-INDUCED STERILITY 1-like
产物	protein IMPAIRED IN BABA-INDUCED STERILITY 1-like
Arabidopsis	`AT1G18670` (IBS1) Protein kinase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:838448] identity=62.9; qcov=1.03; evalue=0; confidence=high
Rice	`Os07g0596600` (Orysa) - identity=57.3; qcov=1.04; evalue=0; confidence=high
GO	GO:0000307 (cyclin-dependent protein kinase holoenzyme complex); GO:0004693 (cyclin-dependent protein serine/threonine kinase activity); GO:0005524 (ATP binding); GO:0005634 (nucleus); GO:0006468 (protein phosphorylation); GO:0008353 (RNA polymerase II CTD heptapeptide repeat kinase activity); GO:0032968 (positive regulation of transcription elongation by RNA polymerase II)
KEGG	-
Pfam	PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr)
InterPro	-
eggNOG	-
NR	GeneID:131020374

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	0.80000	`XP_057805124.1`
2	Cytosol	细胞质基质	0.60000	`XP_057805124.1`
3	Cytoplasm	细胞质	0.20000	`XP_057805124.1`
4	Nucleus	细胞核	0.00000	`XP_057805124.1`
5	Chromosome	染色体	0.00000	`XP_057805124.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:51270499`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr4:51270571`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A18,B33,B4,C19,C71
`Chr4:51270680`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C40
`Chr4:51270765`	`TC`	`T`	1bp_deletion	frameshift_variant	1	C18
`Chr4:51270765`	`TC`	`T`	1bp_deletion	CDS_variant	1	C18
`Chr4:51270789`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B82
`Chr4:51271716`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B94
`Chr4:51272153`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A24,B33,D2,D7
`Chr4:51272380`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B94
`Chr4:51272393`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B9,C54
`Chr4:51272395`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B117,C23,C8
`Chr4:51272497`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B101,B23

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057805124.1

701 aa

350

701

Pkinase

PK_Tyr_Ser-Thr

PF00069 Pkinase 120-404 aa PF07714 PK_Tyr_Ser-Thr 122-331 aa

XP_057805125.1

692 aa

346

692

Pkinase

PK_Tyr_Ser-Thr

PF00069 Pkinase 120-404 aa PF07714 PK_Tyr_Ser-Thr 122-331 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057805124.1`	Pfam	`PF00069`	Pkinase	Domain	120	404	5.7e-69	233.1	Protein kinase domain
`XP_057805124.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	122	331	1.9e-30	106.8	Protein tyrosine and serine/threonine kinase
`XP_057805125.1`	Pfam	`PF00069`	Pkinase	Domain	120	404	5.6e-69	233.2	Protein kinase domain
`XP_057805125.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	122	331	1.9e-30	106.8	Protein tyrosine and serine/threonine kinase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057949141.1
CTGTCACTATTATGTATGCTGCAACCAATCCCCCACCAAAATGGGCGTCTAGTTTTGAAGTTTGAACGCTTTTGAAGGCAACTAAAATCATAAACCAAAATAAAATAGTAGAAAAATGGTGCAGAAATTGAGCCCCAATCCCATTACCAAACCCAAATCAACGTAAAAGTCAAATACATACCCAGAGTTCATTTGGTATAATTCTGCCAACTTTTCTTGGTTTTACACTGTGCAGATTCTCGCTCTTCTTTTAGAGAAGC...

XM_057949142.1
GTCACTATTATGTATGCTGCAACCAATCCCCCACCAAAATGGGCGTCTAGTTTTGAAGTTTGAACGCTTTTGAAGGCAACTAAAATCATAAACCAAAATAAAATAGTAGAAAAATGGTGCAGAAATTGAGCCCCAATCCCATTACCAAACCCAAATCAACGTAAAAGTCAAATACATACCCAGAGTTCATTTGGTATAATTCTGCCAACTTTTCTTGGTTTTACACTGTGCAGATTCTCGCTCTTCTTTTAGAGAAGCAA...

CDS

2 records

下载 CDS FASTA

LOC131020374
ATGGGTTGCGTGTCGTCGAAGCAAACGGTGTCCGTCACGCCGGCCGCGCTGGACCACTCCGGGGCGTTCAATGGTCGGAGCAGGGTGGGGAGCATCGGCGGCGGCGGTTTGGCGGCGGAGCTGGATGCGAACTTGAAGAAGGTGAAGAAGAGGGGTGGTTCGACTGAGTCCGGGAGCGAGGTGGGCGAGTCGGGGCGGACGAGTTCGAATGAGTGTGGAAGTGGGTCGGTGAGTTTTAGGCTGGGAAACCTCCACAAGTT...

Protein

2 records

下载 Protein FASTA

XP_057805124.1
MGCVSSKQTVSVTPAALDHSGAFNGRSRVGSIGGGGLAAELDANLKKVKKRGGSTESGSEVGESGRTSSNECGSGSVSFRLGNLHKFVEGEQVAAGWPAWLSAVAGEAIQGWVPLRADSFEKLEKIGQGTYSTVFRARDLETGKIVALKKVRFDNFEPESVRFMAREITILRRLDHPNIIKLEGLITSRSSCNIYLVFEYMEHDISGLLSSPEITFTEAQVKCYMKQLLSGLEHCHARGVMHRDIKGANLLVDDGGVLKV...

XP_057805125.1
MGCVSSKQTVSVTPAALDHSGAFNGRSRVGSIGGGGLAAELDANLKKVKKRGGSTESGSEVGESGRTSSNECGSGSVSFRLGNLHKFVEGEQVAAGWPAWLSAVAGEAIQGWVPLRADSFEKLEKIGQGTYSTVFRARDLETGKIVALKKVRFDNFEPESVRFMAREITILRRLDHPNIIKLEGLITSRSSCNIYLVFEYMEHDISGLLSSPEITFTEAQVKCYMKQLLSGLEHCHARGVMHRDIKGANLLVDDGGVLKV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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