Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G003487`

染色体: Chr04 坐标: 51315710-51322150 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G003487`
名称	SmilChr04G003487
描述	uncharacterized SmilChr04G003487
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	51315710 - 51322150 / `-`

ID 对照

NCBI Gene ID	`LOC131020378`
GeneID	`131020378`
locus_tag	`-`
NCBI Name	`LOC131020378`
原始查询	`SmilChr04G003487`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	zinc finger (C3HC4-type RING finger) family protein [Source:NCBI gene (formerly Entrezgene);Acc:838447]; symbol=AT1G18660; hit=AT1G18660; species=arabidopsis; confidence=high
产物	zinc finger (C3HC4-type RING finger) family protein [Source:NCBI gene (formerly Entrezgene);Acc:838447]; symbol=AT1G18660; hit=AT1G18660; species=arabidopsis; confidence=high
Arabidopsis	`AT1G18660` (AT1G18660) zinc finger (C3HC4-type RING finger) family protein [Source:NCBI gene (formerly Entrezgene);Acc:838447] identity=61; qcov=0.992; evalue=0; confidence=high
Rice	`Os12g0267900` (OsRFP) - identity=38.2; qcov=0.185; evalue=1.5e-13; confidence=weak
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF00097 (zf-C3HC4); PF02190 (LON_substr_bdg); PF13445 (zf-RING_UBOX); PF13639 (zf-RING_2); PF13920 (zf-C3HC4_3); PF13923 (zf-C3HC4_2)
InterPro	-
eggNOG	-
NR	GeneID:131020378

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057805130.1`
2	Nucleus	细胞核	0.60000	`XP_057805130.1`
3	Cytosol	细胞质基质	0.40000	`XP_057805130.1`
4	Chromosome	染色体	0.00000	`XP_057805130.1`
5	Centromere	着丝粒	0.00000	`XP_057805130.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:51316692`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B26,B48,B60,B76,C16
`Chr4:51317985`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D6
`Chr4:51318012`	`TA`	`T`	1bp_deletion	frameshift_variant	1	C84
`Chr4:51318012`	`TA`	`T`	1bp_deletion	CDS_variant	1	C84
`Chr4:51318709`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B3,B99,C15
`Chr4:51318726`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B49
`Chr4:51318943`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A8
`Chr4:51321531`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C48

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057805130.1

481 aa

240

481

zf-C3HC4_3

zf-RING_2

zf-RING_UBOX

zf-C3HC4

zf-C3HC4_2

LON_substr_bdg

PF13920 zf-C3HC4_3 189-231 aa PF13639 zf-RING_2 191-230 aa PF13445 zf-RING_UBOX 192-227 aa PF00097 zf-C3HC4 192-229 aa PF13923 zf-C3HC4_2 192-229 aa PF02190 LON_substr_bdg 276-472 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057805130.1`	Pfam	`PF13920`	zf-C3HC4_3	Domain	189	231	6.1e-08	33.1	Zinc finger, C3HC4 type (RING finger)
`XP_057805130.1`	Pfam	`PF13639`	zf-RING_2	Domain	191	230	2.1e-08	35.0	Ring finger domain
`XP_057805130.1`	Pfam	`PF13445`	zf-RING_UBOX	Domain	192	227	3.2e-07	30.9	RING-type zinc-finger
`XP_057805130.1`	Pfam	`PF00097`	zf-C3HC4	Domain	192	229	1.7e-09	38.1	Zinc finger, C3HC4 type (RING finger)
`XP_057805130.1`	Pfam	`PF13923`	zf-C3HC4_2	Domain	192	229	2.7e-12	47.0	Zinc finger, C3HC4 type (RING finger)
`XP_057805130.1`	Pfam	`PF02190`	LON_substr_bdg	Family	276	472	3.9e-24	86.4	ATP-dependent protease La (LON) substrate-binding domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057949147.1
AAACGGCGGTGAAAGATTAGGGCAAATTATTTATTGAGAACGAAAGCTCTCGATCGAATCCACACAGTGCGTGAGAATTTTCCAAGGTTTTACATGCATAATTGATTCATAGTCCAGCCTACATTTTTATATGTAGGCGTAGAGAGAGAGAGTAGATTATAGTGTAGTGAGAGAGAAACACGTAAACGAATACAGTCCAAGCGTACAACGAAGGATACAGGGGTGAACACGACGCTTCCACTCACCACCACCGCCACAGT...

CDS

1 records

下载 CDS FASTA

LOC131020378
ATGGCGACTTCTCCAGCTACCGGATTCAGCTTGGAAGGGATCGATCATGTCCAGGATTTTCCATGGCAGAATGGGGAAGGATCATCAATGTCATGGGAGCGGTATAGCCATCTCTACGACCTCATGCACAGGGGAAACACGGCATTTCGTGAAGACCGATTGGATCAGGCAATTGAGTTATATTCAAGAGCTAACCACATTAAGCCTGGTGATTCTATTATTCTGAGCAACCGATGTGCTGCCTATCTCCGGATTAGCCA...

Protein

1 records

下载 Protein FASTA

XP_057805130.1
MATSPATGFSLEGIDHVQDFPWQNGEGSSMSWERYSHLYDLMHRGNTAFREDRLDQAIELYSRANHIKPGDSIILSNRCAAYLRISQFLRSRPPSASEYRPLNGLDPTTHAGLALNDAEKVMNLQSNLATSYILKANALILLEKYELAQDVIRSGLQIDPQSNALSNLEKKIANTFSRRSHENPQHTDDYDCTLCLKLLYEPITTPCGHSFCRSCMFQTMDRGNRCPLCRTVLFISPRTCAISVTLNNXIEKSFPEEYAE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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