Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G003496`

染色体: Chr04 坐标: 51385150-51387182 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G003496`
名称	SmilChr04G003496
描述	uncharacterized SmilChr04G003496
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	51385150 - 51387182 / `-`

ID 对照

NCBI Gene ID	`LOC131020388`
GeneID	`131020388`
locus_tag	`-`
NCBI Name	`LOC131020388`
原始查询	`SmilChr04G003496`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	FKBP-like peptidyl-prolyl cis-trans isomerase family protein [Source:NCBI gene (formerly Entrezgene);Acc:839195]; symbol=AT1G26550; hit=AT1G26550; species=arabidopsis; confidence=high
产物	FKBP-like peptidyl-prolyl cis-trans isomerase family protein [Source:NCBI gene (formerly Entrezgene);Acc:839195]; symbol=AT1G26550; hit=AT1G26550; species=arabidopsis; confidence=high
Arabidopsis	`AT1G26550` (AT1G26550) FKBP-like peptidyl-prolyl cis-trans isomerase family protein [Source:NCBI gene (formerly Entrezgene);Acc:839195] identity=85.9; qcov=0.901; evalue=3.5e-79; confidence=high
Rice	`Os09g0411700` - identity=81.8; qcov=1.04; evalue=2.52e-74; confidence=high
GO	GO:0003677 (DNA binding); GO:0003755 (peptidyl-prolyl cis-trans isomerase activity); GO:0006364 (rRNA processing)
KEGG	-
Pfam	PF00639 (Rotamase); PF13616 (Rotamase_3)
InterPro	-
eggNOG	-
NR	GeneID:131020388

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057805138.1`
2	Cytosol	细胞质基质	1.00000	`XP_057805138.1`
3	Nucleus	细胞核	0.20000	`XP_057805138.1`
4	Nucleoplasm	核质	0.20000	`XP_057805138.1`
5	Chromosome	染色体	0.00000	`XP_057805138.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:51385478`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A7,B124,B140,C20,C23
`Chr4:51385520`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B41,D10
`Chr4:51385925`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B41,D10
`Chr4:51385965`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C27
`Chr4:51386175`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A15,A4,B102
`Chr4:51386231`	`C`	`CT`	1bp_insertion	frameshift_variant	9	B126,B132,B138,B20,B36,B39,B67,B98,C59

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057805138.1

142 aa

142

Rotamase_3

Rotamase

PF13616 Rotamase_3 42-135 aa PF00639 Rotamase 47-136 aa

XP_057805140.1

142 aa

142

Rotamase_3

Rotamase

PF13616 Rotamase_3 42-135 aa PF00639 Rotamase 47-136 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057805138.1`	Pfam	`PF13616`	Rotamase_3	Domain	42	135	1.2e-16	61.9	PPIC-type PPIASE domain
`XP_057805138.1`	Pfam	`PF00639`	Rotamase	Domain	47	136	4e-18	66.9	PPIC-type PPIASE domain
`XP_057805140.1`	Pfam	`PF13616`	Rotamase_3	Domain	42	135	1.2e-16	61.9	PPIC-type PPIASE domain
`XP_057805140.1`	Pfam	`PF00639`	Rotamase	Domain	47	136	4e-18	66.9	PPIC-type PPIASE domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057949155.1
GATTTTTTATTTTGGAATATGCTACGTAAGTAAAATATAAAAACCAAATAATCAAAGAATTGGGGGTGCAAATGAGACCAGGGTTTTACGGGGTAAAATCGTCAAATCAGAGTCGCGAAATCCACTAGTAGGAATGAGACGACGAACATGTATAATTTGCATTAGATTTTTGTGCTTCATCTCTCAGCAACTCTAAATTATTCACTTCCGAGTGATGGGGAAGGATTCCAAGTCAGCAGGAAAAGGCAAGGGAAAGCAAG...

XM_057949157.1
CTATTCGTCCTACTCAATTTCTATTTCTTATTGATTCCTGTTGATATTCGTGTGATGGGGAAGGATTCCAAGTCAGCAGGAAAAGGCAAGGGAAAGCAAGCAGCCGGGGGTAGTGACGATGCTGCATCGAAGGGCAAAGCAAAAGGAGGGAAAGGAGATGGTTTAGGAACTTGCACATATGTCAAAGCTAGACATATCTTGTGTGAGAAGCAAGGAAAGATCAACGAAGCCTATAAGAAGCTACAGGATGGCTGGCTCAG...

CDS

2 records

下载 CDS FASTA

LOC131020388
ATGGGGAAGGATTCCAAGTCAGCAGGAAAAGGCAAGGGAAAGCAAGCAGCCGGGGGTAGTGACGATGCTGCATCGAAGGGCAAAGCAAAAGGAGGGAAAGGAGATGGTTTAGGAACTTGCACATATGTCAAAGCTAGACATATCTTGTGTGAGAAGCAAGGAAAGATCAACGAAGCCTATAAGAAGCTACAGGATGGCTGGCTCAGTAACGGAGACAAAGTTCCACCCGCTGAGTTTGCTAAGATAGCTGCAGAATATTC...

Protein

2 records

下载 Protein FASTA

XP_057805138.1
MGKDSKSAGKGKGKQAAGGSDDAASKGKAKGGKGDGLGTCTYVKARHILCEKQGKINEAYKKLQDGWLSNGDKVPPAEFAKIAAEYSECPSGKKGGDLGWFPRGKMAGPFQEVAFNTPVGVTSAPFKSTHGYHIILSEGRKN

XP_057805140.1
MGKDSKSAGKGKGKQAAGGSDDAASKGKAKGGKGDGLGTCTYVKARHILCEKQGKINEAYKKLQDGWLSNGDKVPPAEFAKIAAEYSECPSGKKGGDLGWFPRGKMAGPFQEVAFNTPVGVTSAPFKSTHGYHIILSEGRKN

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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