Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G003505`

染色体: Chr04 坐标: 51448059-51449794 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G003505`
名称	SmilChr04G003505
描述	thioredoxin-like 1-2, chloroplastic
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	51448059 - 51449794 / `+`

ID 对照

NCBI Gene ID	`LOC131020395`
GeneID	`131020395`
locus_tag	`-`
NCBI Name	`LOC131020395`
原始查询	`SmilChr04G003505`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	thioredoxin-like 1-2, chloroplastic
产物	thioredoxin-like 1-2%2C chloroplastic
Arabidopsis	`AT5G61440` (ACHT5) atypical CYS HIS rich thioredoxin 5 [Source:NCBI gene (formerly Entrezgene);Acc:836265] identity=68.7; qcov=0.625; evalue=7.37e-74; confidence=high
Rice	`Os07g0684100` - identity=71.1; qcov=0.621; evalue=5.28e-73; confidence=high
GO	GO:0045454 (cell redox homeostasis)
KEGG	-
Pfam	PF00085 (Thioredoxin)
InterPro	-
eggNOG	-
NR	GeneID:131020395

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057805150.1`
2	Chloroplast stroma	叶绿体基质	1.00000	`XP_057805152.1`
3	Nucleus	细胞核	0.00000	`XP_057805150.1`
4	Chromosome	染色体	0.00000	`XP_057805150.1`
5	Centromere	着丝粒	0.00000	`XP_057805150.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:51448762`	`GAA`	`G`	2bp_deletion	frameshift_variant	165	A1,A10,A11,A13,A14,A18,A19,A2,A20,A21,A22,A4,A5,A6,A8,A9,B1,B10,B102,B103,B104,B105,B106,B108,B109,B11,B111,B112,B113,B114,B117,B119,B12,B121,B122,B123,B124,B126,B128,B132,B134,B135,B136,B138,B139,B14,B140,B17,B18,B21,B22,B25,B28,B31,B34,B35,B36,B38,B39,B41,B42,B43,B44,B47,B48,B49,B51,B53,B55,B56,B57,B58,B6,B60,B61,B62,B64,B69,B7,B70,B72,B73,B76,B77,B78,B8,B80,B81,B83,B84,B86,B88,B9,B90,B91,B93,B94,B95,B96,B97,C11,C13,C14,C18,C19,C20,C21,C22,C23,C24,C25,C27,C28,C29,C30,C31,C32,C34,C35,C36,C37,C38,C39,C41,C42,C45,C46,C47,C48,C50,C52,C53,C54,C57,C58,C59,C6,C60,C67,C68,C69,C7,C70,C72,C73,C74,C75,C77,C78,C79,C80,C81,C82,C83,C84,C85,C9,D1,D11,D2,D4,D5,D6,D7,D8
`Chr4:51448766`	`G`	`GCT`	2bp_insertion	frameshift_variant	165	A1,A10,A11,A13,A14,A18,A19,A2,A20,A21,A22,A4,A5,A6,A8,A9,B1,B10,B102,B103,B104,B105,B106,B108,B109,B11,B111,B112,B113,B114,B117,B119,B12,B121,B122,B123,B124,B126,B128,B132,B134,B135,B136,B138,B139,B14,B140,B17,B18,B21,B22,B25,B28,B31,B34,B35,B36,B38,B39,B41,B42,B43,B44,B47,B48,B49,B51,B53,B55,B56,B57,B58,B6,B60,B61,B62,B64,B69,B7,B70,B72,B73,B76,B77,B78,B8,B80,B81,B83,B84,B86,B88,B9,B90,B91,B93,B94,B95,B96,B97,C11,C13,C14,C18,C19,C20,C21,C22,C23,C24,C25,C27,C28,C29,C30,C31,C32,C34,C35,C36,C37,C38,C39,C41,C42,C45,C46,C47,C48,C50,C52,C53,C54,C57,C58,C59,C6,C60,C67,C68,C69,C7,C70,C72,C73,C74,C75,C77,C78,C79,C80,C81,C82,C83,C84,C85,C9,D1,D11,D2,D4,D5,D6,D7,D8
`Chr4:51449393`	`A`	`AT`	1bp_insertion	frameshift_variant	19	A24,B120,B123,B125,B14,B63,B65,B68,B80,B90,B92,C17,C28,C33,C60,C61,C86,C87,D3
`Chr4:51449570`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B66

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057805150.1

252 aa

126

252

Thioredoxin

PF00085 Thioredoxin 101-172 aa

XP_057805151.1

250 aa

125

250

Thioredoxin

PF00085 Thioredoxin 99-170 aa

XP_057805152.1

242 aa

121

242

Thioredoxin

PF00085 Thioredoxin 101-172 aa

XP_057805153.1

240 aa

120

240

Thioredoxin

PF00085 Thioredoxin 99-170 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057805150.1`	Pfam	`PF00085`	Thioredoxin	Domain	101	172	2.8e-12	47.3	Thioredoxin
`XP_057805151.1`	Pfam	`PF00085`	Thioredoxin	Domain	99	170	2.7e-12	47.3	Thioredoxin
`XP_057805152.1`	Pfam	`PF00085`	Thioredoxin	Domain	101	172	1.7e-12	48.0	Thioredoxin
`XP_057805153.1`	Pfam	`PF00085`	Thioredoxin	Domain	99	170	1.7e-12	48.0	Thioredoxin

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057949167.1
GAAATCCAATTATAGGGAAGACTTAAAATAGAAAGTAAAGCAAAAGAAAGATTTGAGGGCGCGGAATTGCTCAGCTGAAACAAATTACTGAAATCACGAAGAGATTCCTACAAAGAAGGCTCAAAAATCTCAGCACCACCTACATCATCCCATTTTATTACCCCATTATCTGAATTAATCGTCATTTTCCCCTTATCCATACCTTAGTTATAGGAAACGTTTATTTCCTTAAATGAACCAAAAAGCACAGCTTGCAGAAA...

XM_057949169.1
GAAATCCAATTATAGGGAAGACTTAAAATAGAAAGTAAAGCAAAAGAAAGATTTGAGGGCGCGGAATTGCTCAGCTGAAACAAATTACTGAAATCACGAAGAGATTCCTACAAAGAAGGCTCAAAAATCTCAGCACCACCTACATCATCCCATTTTATTACCCCATTATCTGAATTAATCGTCATTTTCCCCTTATCCATACCTTAGTTATAGGAAACGTTTATTTCCTTAAATGAACCAAAAAGCACAGCTTGCAGAAA...

CDS

4 records

下载 CDS FASTA

LOC131020395
ATGTCTTGTTGTTTGAAGGCTGGATTCTCTTTTTATGGGTCCAATGACCTTGCTTCCAAGAACAGAGCAAAAGGGTCATTTAGGGTTTGCTCTTCAATTCAGACTCTTCAATATAAGGAGTCATCAAATCCCAGAGAATGCTTAGGCAAAACTCTTCATTTGTCAGATCAGAAACATGTTACCAATTTTGTCACTAAATCCCCTAAATCAGACCCTCCCAATGCACAGACATCATTGAGATGGTGGGAAAAATCCCTTCA...

Protein

4 records

下载 Protein FASTA

XP_057805150.1
MSCCLKAGFSFYGSNDLASKNRAKGSFRVCSSIQTLQYKESSNPRECLGKTLHLSDQKHVTNFVTKSPKSDPPNAQTSLRWWEKSLHQNMIEIQSAQELVDSLLNAGERLVVLDFYSPNCGGCRTLHPKICQLAEMNPNSLFLQINYENHKEMCDSLNIKVLPFFRFYRGAEGRACSFSCTNATVRDLCFIYLFFSCINPSDSAAVSCCATIQCLRSRNLKMHWPNMALARAVSGQQRGWMNRSCLHWPHVV

XP_057805151.1
MSCCLKAGFSFYGSNDLASKNRAKGSFRVCSSIQTLQYKESSNPRECLGKTLHLSDQKHVTNFVTKSPKSDPPNTSLRWWEKSLHQNMIEIQSAQELVDSLLNAGERLVVLDFYSPNCGGCRTLHPKICQLAEMNPNSLFLQINYENHKEMCDSLNIKVLPFFRFYRGAEGRACSFSCTNATVRDLCFIYLFFSCINPSDSAAVSCCATIQCLRSRNLKMHWPNMALARAVSGQQRGWMNRSCLHWPHVV

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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