当前解析结果
SmilChr04G003529| 统一新 Gene ID | SmilChr04G003529 |
|---|---|
| 名称 | SmilChr04G003529 |
| 描述 | ABC transporter G family member STR2-like |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 51653252 - 51655857 / - |
| NCBI Gene ID | LOC131020413 |
|---|---|
| GeneID | 131020413 |
| locus_tag | - |
| NCBI Name | LOC131020413 |
| 原始查询 | SmilChr04G003529 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | ABC transporter G family member STR2-like |
| 产物 | ABC transporter G family member STR2-like |
| Arabidopsis | AT2G39350 (ABCG1)ABC-2 type transporter family protein [Source:NCBI gene (formerly Entrezgene);Acc:818520] identity=36.3; qcov=1.05; evalue=2.35e-143; confidence=medium |
| Rice | Os07g0191600 (STR2)- identity=63.8; qcov=0.999; evalue=0; confidence=high |
| GO | GO:0005524 (ATP binding); GO:0016020 (membrane); GO:0016887 (ATP hydrolysis activity); GO:0140359 (ABC-type transporter activity) |
| KEGG | smil02010 (ABC transporters - Salvia miltiorrhiza (redroot sage)); smil04981 (Folate transport and metabolism - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00005 (ABC_tran); PF01061 (ABC2_membrane) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131020413 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057805172.1 |
| 2 | Vacuole | 液泡 | 0.40000 | XP_057805172.1 |
| 3 | Vacuole membrane | 液泡膜 | 0.40000 | XP_057805172.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057805172.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057805172.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:51653462 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B7,D4 |
Chr4:51653577 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B33,B4,C19,C71 |
Chr4:51653967 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C39 |
Chr4:51654027 |
A |
AC |
1bp_insertion | frameshift_variant | 1 | B69 |
Chr4:51654027 |
A |
AC |
1bp_insertion | CDS_variant | 1 | B69 |
Chr4:51654040 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B97 |
Chr4:51654227 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr4:51654722 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C32 |
Chr4:51654949 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B106,C48,C60,C80 |
Chr4:51655209 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A2,B96 |
Chr4:51655409 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B50,B6,B85,C63 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057805172.1PF00005
ABC_tran 53-204 aa
PF01061
ABC2_membrane 440-645 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057805172.1 |
Pfam | PF00005 |
ABC_tran | Domain | 53 | 204 | 4.1e-26 | 92.9 | ABC transporter |
XP_057805172.1 |
Pfam | PF01061 |
ABC2_membrane | Domain | 440 | 645 | 1.6e-43 | 149.5 | ABC-2 type transporter |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。