Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G003534`

染色体: Chr04 坐标: 51699642-51714902 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G003534`
名称	SmilChr04G003534
描述	calcium-transporting ATPase 8, plasma membrane-type
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	51699642 - 51714902 / `+`

ID 对照

NCBI Gene ID	`LOC131020417`
GeneID	`131020417`
locus_tag	`-`
NCBI Name	`LOC131020417`
原始查询	`SmilChr04G003534`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	calcium-transporting ATPase 8, plasma membrane-type
产物	calcium-transporting ATPase 8%2C plasma membrane-type
Arabidopsis	`AT5G57110` (ACA8) autoinhibited Ca2+ -ATPase [Source:NCBI gene (formerly Entrezgene);Acc:835815] identity=72; qcov=0.978; evalue=0; confidence=high
Rice	`Os04g0605500` (ACA11) - identity=72.4; qcov=0.964; evalue=0; confidence=high
GO	GO:0005388 (P-type calcium transporter activity); GO:0005516 (calmodulin binding); GO:0005524 (ATP binding); GO:0016020 (membrane); GO:0016887 (ATP hydrolysis activity); GO:0043231 (intracellular membrane-bounded organelle); GO:0070588 (calcium ion transmembrane transport)
KEGG	-
Pfam	PF00122 (E1-E2_ATPase); PF00689 (Cation_ATPase_C); PF00690 (Cation_ATPase_N); PF00702 (Hydrolase); PF12515 (CaATP_NAI); PF13246 (Cation_ATPase)
InterPro	-
eggNOG	-
NR	GeneID:131020417

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057805178.1`
2	Vacuole	液泡	0.20000	`XP_057805178.1`
3	Nucleus	细胞核	0.00000	`XP_057805178.1`
4	Chromosome	染色体	0.00000	`XP_057805178.1`
5	Centromere	着丝粒	0.00000	`XP_057805178.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:51700102`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A22,B89,C76,D8
`Chr4:51703080`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B99
`Chr4:51705485`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C43
`Chr4:51705490`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B103,C67
`Chr4:51706914`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B104,C33
`Chr4:51708923`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A2
`Chr4:51709235`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D7
`Chr4:51712554`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B46
`Chr4:51712773`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C70

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057805178.1

1080 aa

540

1080

CaATP_NAI

Cation_ATPase_N

E1-E2_ATPase

Cation_ATPase

Hydrolase

Cation_ATPase_C

PF12515 CaATP_NAI 33-74 aa PF00690 Cation_ATPase_N 141-210 aa PF00122 E1-E2_ATPase 263-360 aa PF13246 Cation_ATPase 530-697 aa PF00702 Hydrolase 684-808 aa PF00689 Cation_ATPase_C 879-1056 aa

XP_057805179.1

1080 aa

540

1080

CaATP_NAI

Cation_ATPase_N

E1-E2_ATPase

Cation_ATPase

Hydrolase

Cation_ATPase_C

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057805178.1`	Pfam	`PF12515`	CaATP_NAI	Family	33	74	3.1e-16	59.3	Ca2+-ATPase N terminal autoinhibitory domain
`XP_057805178.1`	Pfam	`PF00690`	Cation_ATPase_N	Domain	141	210	7.2e-13	48.7	Cation transporter/ATPase, N-terminus
`XP_057805178.1`	Pfam	`PF00122`	E1-E2_ATPase	Domain	263	360	2.5e-19	69.7	P-type ATPase actuator domain
`XP_057805178.1`	Pfam	`PF13246`	Cation_ATPase	Family	530	697	4.1e-32	112.1	P-type ATPase, cytoplasmic domain N
`XP_057805178.1`	Pfam	`PF00702`	Hydrolase	Domain	684	808	1.3e-15	59.0	haloacid dehalogenase-like hydrolase
`XP_057805178.1`	Pfam	`PF00689`	Cation_ATPase_C	Family	879	1056	7.4e-44	150.3	Cation transporting ATPase, C-terminus
`XP_057805179.1`	Pfam	`PF12515`	CaATP_NAI	Family	33	74	3.1e-16	59.3	Ca2+-ATPase N terminal autoinhibitory domain
`XP_057805179.1`	Pfam	`PF00690`	Cation_ATPase_N	Domain	141	210	7.2e-13	48.7	Cation transporter/ATPase, N-terminus
`XP_057805179.1`	Pfam	`PF00122`	E1-E2_ATPase	Domain	263	360	2.5e-19	69.7	P-type ATPase actuator domain
`XP_057805179.1`	Pfam	`PF13246`	Cation_ATPase	Family	530	697	4.1e-32	112.1	P-type ATPase, cytoplasmic domain N
`XP_057805179.1`	Pfam	`PF00702`	Hydrolase	Domain	684	808	1.3e-15	59.0	haloacid dehalogenase-like hydrolase
`XP_057805179.1`	Pfam	`PF00689`	Cation_ATPase_C	Family	879	1056	7.4e-44	150.3	Cation transporting ATPase, C-terminus

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057949195.1
ACCACGCTAAGCCCGGTACACCTCACCACACAAGAAGCTATTTATGAGAAATTTCCAGGCAATTTCTTATTTCTTTCTCGCACCTTTCCACACGCTATCTGTGTGAACCCACCACTCCCGGAGACGGCGGTGGTTTCGAATTTCCCGGCATTCATCGCGTTTTCCGGTAGTGTGTTCGAGAATACTAGAAGGTGTCATCTTTCCTGCGACTAAGCACTGAGAGAATTGGGTATGACTGAAGAAATCAAGTACAAGAAGAA...

XM_057949196.1
CTAAGCCCGGTACACCTCACCACACAAGAAGCTATTTATGAGAAATTTCCAGGCAATTTCTTATTTCTTTCTCGCACCTTTCCACACGCTATCTGTGTGAACCCACCACTCCCGGAGACGGCGGTGGTTTCGAATTTCCCGGCATTCATCGCGTGTGTTCGAGAATACTAGAAGGTGTCATCTTTCCTGCGACTAAGCACTGAGAGAATTGGGTATGACTGAAGAAATCAAGTACAAGAAGAAAGGCTTCGACCTTGAAG...

CDS

2 records

下载 CDS FASTA

LOC131020417
ATGACTGAAGAAATCAAGTACAAGAAGAAAGGCTTCGACCTTGAAGCGGGGAGTAGCCGGCGCGATTATCCGGAAGATGAAGACGACGGCGCTGGACCGTTCGACATTGTTCGGACGAAGAGTGCTCCGGTGCACCGGCTGCGTAGGTGGAGGCAAGCTGCACTTGTCCTAAATGCTTCACGGCGATTTCGTTATACATTGGACTTGAAGAAAGAAGAAGAGAGGAGGCAGTTAATTGCTAAGATTAGAACACATGCTCA...

Protein

2 records

下载 Protein FASTA

XP_057805178.1
MTEEIKYKKKGFDLEAGSSRRDYPEDEDDGAGPFDIVRTKSAPVHRLRRWRQAALVLNASRRFRYTLDLKKEEERRQLIAKIRTHAQVIRAAVLFQEAGKGLPGALPSTIPLSPTRSVDFGISSEELVAISKEHDLSLLQQNGGVKGLAEKLKSNQENGVSGDETDIINRKKAFGSNTYPRKKGRSFWRFVWDACRDTTLVILMIAATASLVLGIKTEGIKEGWYDGGSIALAVFIVIVFTAVSDYKQSLQFQNLNEEKE...

XP_057805179.1
MTEEIKYKKKGFDLEAGSSRRDYPEDEDDGAGPFDIVRTKSAPVHRLRRWRQAALVLNASRRFRYTLDLKKEEERRQLIAKIRTHAQVIRAAVLFQEAGKGLPGALPSTIPLSPTRSVDFGISSEELVAISKEHDLSLLQQNGGVKGLAEKLKSNQENGVSGDETDIINRKKAFGSNTYPRKKGRSFWRFVWDACRDTTLVILMIAATASLVLGIKTEGIKEGWYDGGSIALAVFIVIVFTAVSDYKQSLQFQNLNEEKE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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