Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G003549`

染色体: Chr04 坐标: 51829218-51840224 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G003549`
名称	SmilChr04G003549
描述	uncharacterized SmilChr04G003549
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	51829218 - 51840224 / `+`

ID 对照

NCBI Gene ID	`LOC131020433`
GeneID	`131020433`
locus_tag	`-`
NCBI Name	`LOC131020433`
原始查询	`SmilChr04G003549`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	OsBGLU1; symbol=OsBGLU1; hit=Os03g0749300; species=rice; confidence=high
产物	OsBGLU1; symbol=OsBGLU1; hit=Os03g0749300; species=rice; confidence=high
Arabidopsis	`AT5G20950` (AT5G20950) Glycosyl hydrolase family protein [Source:NCBI gene (formerly Entrezgene);Acc:832220] identity=71.8; qcov=0.99; evalue=0; confidence=high
Rice	`Os03g0749300` (OsBGLU1) - identity=72.2; qcov=0.992; evalue=0; confidence=high
GO	GO:0008422 (beta-glucosidase activity); GO:0009251 (glucan catabolic process)
KEGG	smil00460 (Cyanoamino acid metabolism - Salvia miltiorrhiza (redroot sage)); smil00500 (Starch and sucrose metabolism - Salvia miltiorrhiza (redroot sage)); smil00999 (Biosynthesis of various plant secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage))
Pfam	PF00933 (Glyco_hydro_3); PF01915 (Glyco_hydro_3_C)
InterPro	-
eggNOG	-
NR	GeneID:131020433

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Secreted	分泌到胞外	0.80000	`XP_057805203.1`
2	Lysosome	溶酶体	0.40000	`XP_057805203.1`
3	Vacuole	液泡	0.20000	`XP_057805203.1`
4	Nucleus	细胞核	0.00000	`XP_057805203.1`
5	Chromosome	染色体	0.00000	`XP_057805203.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:51836396`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C33
`Chr4:51836553`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B1
`Chr4:51836664`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B95,D6
`Chr4:51836839`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B13
`Chr4:51838842`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A25,B36,B41,B85
`Chr4:51838858`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	C28,C30,C46,C56
`Chr4:51838920`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B140
`Chr4:51839335`	`TA`	`T`	1bp_deletion	frameshift_variant	1	D5
`Chr4:51839335`	`TA`	`T`	1bp_deletion	CDS_variant	1	D5
`Chr4:51839343`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B67,B68,C2,C48
`Chr4:51839575`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B114
`Chr4:51839695`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C5,D9

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057805203.1

617 aa

308

617

Glyco_hydro_3

Glyco_hydro_3_C

PF00933 Glyco_hydro_3 48-376 aa PF01915 Glyco_hydro_3_C 414-616 aa

XP_057805204.1

617 aa

308

617

Glyco_hydro_3

Glyco_hydro_3_C

PF00933 Glyco_hydro_3 48-376 aa PF01915 Glyco_hydro_3_C 414-616 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057805203.1`	Pfam	`PF00933`	Glyco_hydro_3	Domain	48	376	6.8e-65	220.3	Glycosyl hydrolase family 3 N terminal domain
`XP_057805203.1`	Pfam	`PF01915`	Glyco_hydro_3_C	Domain	414	616	3.2e-41	142.2	Glycosyl hydrolase family 3 C-terminal domain
`XP_057805204.1`	Pfam	`PF00933`	Glyco_hydro_3	Domain	48	376	6.8e-65	220.3	Glycosyl hydrolase family 3 N terminal domain
`XP_057805204.1`	Pfam	`PF01915`	Glyco_hydro_3_C	Domain	414	616	3.2e-41	142.2	Glycosyl hydrolase family 3 C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057949221.1
TTTGAGTGCTTTCCAGTGTCTCCCTCTTTAAGTAGCCTTTGATTGCTCCATTATCGAGAGAGAGAGAGAGAGAAAGAAAGTGGGCGTTAGTAATGGAGGCTGTTCCAAGATCGATCCTTTCTTCATTCCATGCATGTATTGTTTTGTATTGTAATGAAAGATGATCAATCTCGGACCAGGCTTCATTCCTCACGCCTTCATTTCTCATCCCCAAACAAACGATCACATATTTACATCTGTGTTCTTACAACTTGCTTCCT...

XM_057949220.1
AAATTCTTCAAATTCCAAATCACAATTGCAGCTAACATTTCTATAAATTCGACCTCTATCCCACCCCATCTCCCAACTCTCTCTCTCTCTCTCCACACACACACACAAAAGACAAAACCAAGGTGCTTGGAAGTGGAATAACTGAAAATATGAAGAAAGCGACTGCACTAATCTTGATCGGAATTCTAGTGATATGTTGCTGCACAGACGCATCAAATGCAGATTACGTCCTATACAGAGATCCAAAGCAGCCATTGAAT...

CDS

2 records

下载 CDS FASTA

LOC131020433
ATGAAGAAAGCGACTGCACTAATCTTGATCGGAATTCTAGTGATATGTTGCTGCACAGACGCATCAAATGCAGATTACGTCCTATACAGAGATCCAAAGCAGCCATTGAATCGAAGAATAAAGGACCTAATGAAGAAGATGACATTAGAGGAGAAGCTTGGCCAAATGGTGCAGATTGAGCGATCCGTCGCTTCACCACAAGTCATGACCAAATATTTCATTGGGAGCGTGCTGAGTGGCGGAGGCAGTGTTCCAGCCCC...

Protein

2 records

下载 Protein FASTA

XP_057805203.1
MKKATALILIGILVICCCTDASNADYVLYRDPKQPLNRRIKDLMKKMTLEEKLGQMVQIERSVASPQVMTKYFIGSVLSGGGSVPAPQAPPKVWVDMVNELQKGSLSTRLGIPMIYGIDGVHGHNNVYNATIFPHNIGLGATRDPQLVKRIGAATALEIRATGIPYTFAPCIAVCRDPRWGRCYESYSEDPSIVRAMTELIPGLQGDIPPHSRKGVPYLAGQDKVIACAKHYVGDGGTTKGINENNTVASMHQLLSIHMP...

XP_057805204.1
MKKATALILIGILVICCCTDASNADYVLYRDPKQPLNRRIKDLMKKMTLEEKLGQMVQIERSVASPQVMTKYFIGSVLSGGGSVPAPQAPPKVWVDMVNELQKGSLSTRLGIPMIYGIDGVHGHNNVYNATIFPHNIGLGATRDPQLVKRIGAATALEIRATGIPYTFAPCIAVCRDPRWGRCYESYSEDPSIVRAMTELIPGLQGDIPPHSRKGVPYLAGQDKVIACAKHYVGDGGTTKGINENNTVASMHQLLSIHMP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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