Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G003558`

染色体: Chr04 坐标: 51959817-51966197 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G003558`
名称	SmilChr04G003558
描述	uncharacterized SmilChr04G003558
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	51959817 - 51966197 / `-`

ID 对照

NCBI Gene ID	`LOC131020442`
GeneID	`131020442`
locus_tag	`-`
NCBI Name	`LOC131020442`
原始查询	`SmilChr04G003558`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	zinc knuckle (CCHC-type) family protein [Source:NCBI gene (formerly Entrezgene);Acc:823456]; symbol=AT3G43590; hit=AT3G43590; species=arabidopsis; confidence=medium
产物	zinc knuckle (CCHC-type) family protein [Source:NCBI gene (formerly Entrezgene);Acc:823456]; symbol=AT3G43590; hit=AT3G43590; species=arabidopsis; confidence=medium
Arabidopsis	`AT3G43590` (AT3G43590) zinc knuckle (CCHC-type) family protein [Source:NCBI gene (formerly Entrezgene);Acc:823456] identity=40.3; qcov=0.628; evalue=1.37e-35; confidence=medium
Rice	`Os11g0573200` - identity=36.9; qcov=0.263; evalue=1.31e-08; confidence=weak
GO	GO:0003676 (nucleic acid binding); GO:0008270 (zinc ion binding)
KEGG	-
Pfam	PF00098 (zf-CCHC)
InterPro	-
eggNOG	-
NR	GeneID:131020442

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057805222.1`
2	Cytoplasm	细胞质	0.60000	`XP_057805222.1`
3	Chromosome	染色体	0.00000	`XP_057805222.1`
4	Centromere	着丝粒	0.00000	`XP_057805222.1`
5	Chromatin	染色质	0.00000	`XP_057805222.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:51960254`	`A`	`AT`	1bp_insertion	frameshift_variant	9	A15,B26,B43,C24,C39,C6,C76,C85,D8
`Chr4:51960260`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B104,C29
`Chr4:51960347`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr4:51961573`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr4:51961620`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B35,C14,C40
`Chr4:51962860`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A4
`Chr4:51963069`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B35,C14,C40
`Chr4:51964468`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A21,B64,B93
`Chr4:51964473`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C29
`Chr4:51964626`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C38
`Chr4:51965498`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr4:51965510`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C11,C69

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057805222.1

329 aa

164

329

zf-CCHC

PF00098 zf-CCHC 240-254 aa

XP_057805223.1

329 aa

164

329

zf-CCHC

PF00098 zf-CCHC 240-254 aa

XP_057805224.1

320 aa

160

320

zf-CCHC

PF00098 zf-CCHC 231-245 aa

XP_057805225.1

320 aa

160

320

zf-CCHC

PF00098 zf-CCHC 231-245 aa

XP_057805226.1

320 aa

160

320

zf-CCHC

PF00098 zf-CCHC 231-245 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057805222.1`	Pfam	`PF00098`	zf-CCHC	Domain	240	254	1.7e-11	44.4	Zinc knuckle
`XP_057805223.1`	Pfam	`PF00098`	zf-CCHC	Domain	240	254	1.7e-11	44.4	Zinc knuckle
`XP_057805224.1`	Pfam	`PF00098`	zf-CCHC	Domain	231	245	3.5e-09	37.1	Zinc knuckle
`XP_057805225.1`	Pfam	`PF00098`	zf-CCHC	Domain	231	245	3.5e-09	37.1	Zinc knuckle
`XP_057805226.1`	Pfam	`PF00098`	zf-CCHC	Domain	231	245	3.5e-09	37.1	Zinc knuckle

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

5 records

下载 cDNA FASTA

XM_057949243.1
CGGACAACCTACGTTTTACTGCGAACCAACTCTGCTGAAGGCCAGATTTTTACCGAGGCAGAATAGCGGCCGATGCCCCCACGTTGCCAATTTCACCAACAATTTAATTTAAATGCTGTCTCAGAAAGGAAAATGGCTGAAAGGGGTCTTTGTTTTCTTCCCTTTTCGGTGAATGATTCCGGCGGCCTAAGATTCTGGAGCTCGTAGCTGCGGCTGGGTTAGTCAAATCAAGCATTAGATTTGCTGGGAAGGGTTTTGTT...

XM_057949242.1
GGACAACCTACGTTTTACTGCGAACCAACTCTGCTGAAGGCCAGATTTTTACCGAGGCAGAATAGCGGCCGATGCCCCCACGTTGCCAATTTCACCAACAATTTAATTTAAATGCTGTCTCAGAAAGGAAAATGGCTGAAAGGGGTCTTTGTTTTCTTCCCTTTTCGGTGAATGATTCCGGCGGCCTAAGATTCTGGAGCTCGTAGCTGCGGCTGGGTTAGTCAAATCAAGCATTAGATTTGCTGGGAAGGGTTTTGTTT...

CDS

5 records

下载 CDS FASTA

LOC131020442
ATGACATCTGAAGAATGGCGCACCGATACCGATTTGGATAGTGTAGACTTAGCTCATACTACTCAAATTGCAAAGAAGGCTGAAAATGTTGATGCTGCTGATGTGATGCGAGTGGATATTGAGTATGGTTCATTTGTATCATCTTCAGAAGACCCCATGGAAGAGCTTGTAATTCAGGCTTCGGCAACAGAAGAAGAAAGGGTTGGAGAGTATGGTTGCAATATTAATAATGACTATGATATCAATTCAGAAAGAGCAAG...

Protein

5 records

下载 Protein FASTA

XP_057805222.1
MTSEEWRTDTDLDSVDLAHTTQIAKKAENVDAADVMRVDIEYGSFVSSSEDPMEELVIQASATEEERVGEYGCNINNDYDINSERASDDAKARLVVAMESHARKENRVLKKLLRAPRYFDYPESSWLECNELSEDDDEGHKSCYICGDIDHSGNRCKKVNACIICSVKGHLVKDCPSKNVELDSAPTPCLRCGNTDHDMFSCTYNYDSEDLKAIECYICKQAGHLCCVENKARGPNEASCYRCGQSGHFGLECTTSNVTT...

XP_057805223.1
MTSEEWRTDTDLDSVDLAHTTQIAKKAENVDAADVMRVDIEYGSFVSSSEDPMEELVIQASATEEERVGEYGCNINNDYDINSERASDDAKARLVVAMESHARKENRVLKKLLRAPRYFDYPESSWLECNELSEDDDEGHKSCYICGDIDHSGNRCKKVNACIICSVKGHLVKDCPSKNVELDSAPTPCLRCGNTDHDMFSCTYNYDSEDLKAIECYICKQAGHLCCVENKARGPNEASCYRCGQSGHFGLECTTSNVTT...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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